RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LGALSLQ3ZCW2 172 aaPredicted RBP4.81□□□□□ -1.64
USP54-208ENST00000461520 C14orf177Q52M58 125 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 COX8CQ7Z4L0 72 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 HIST1H2BAQ96A08 127 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 Q9HAA7 133 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IL36BQ9NZH7 164 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 SRRM2Q9UQ35 2752 aaKnown RBP4.8□□□□□ -1.64
USP54-208ENST00000461520 A0A087WWC5 75 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 FXYD6-FXYD2A0A087WZ82 144 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 TRAV8-3A0A0A6YYJ7 113 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 FAM74A7A6NL05 159 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 B4DEV8 164 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 PEX7O00628 323 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 C1QBP02746 253 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 LINC00694P0DN24 101 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 UBE2G2P60604 165 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 GAGE5Q13069 117 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 DNLZQ5SXM8 178 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 AKR1C8PQ5T2L2 129 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 UFSP1Q6NVU6 142 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 Q86TA4 180 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 ZFP30Q9Y2G7 519 aa4.8□□□□□ -1.64
USP54-208ENST00000461520 KRBOX1C9JBD0 128 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 SMLR1H3BR10 107 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 H3BVH4 76 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 SMR3BP02814 79 aaPredicted RBP4.79□□□□□ -1.64
USP54-208ENST00000461520 ARMS2P0C7Q2 107 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 FHITP49789 147 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 CRIP1P50238 77 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 UBE2G1P62253 170 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 OR11H4Q8NGC9 324 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 OR2T35Q8NGX2 323 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 ZC2HC1AQ96GY0 325 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 FMC1Q96HJ9 113 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 TCEAL7Q9BRU2 100 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 SAMD10Q9BYL1 202 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 JPT2Q9H910 190 aa4.79□□□□□ -1.64
USP54-208ENST00000461520 TRBV6-1A0A0K0K1D8 114 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 MAP1LC3B2A6NCE7 125 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 SH2D1AO60880 128 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 SEC11BP0C7V7 166 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 ZNF674Q2M3X9 581 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 FAM162BQ5T6X4 162 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 FAM74A4Q5TZK3 123 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 DAZ4Q86SG3 579 aaKnown RBP4.78□□□□□ -1.64
USP54-208ENST00000461520 C14orf178Q8N769 122 aaPredicted RBP4.78□□□□□ -1.64
USP54-208ENST00000461520 STOML3Q8TAV4 291 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 SFRP2Q96HF1 295 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 MAP1LC3BQ9GZQ8 125 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 GFRA4Q9GZZ7 299 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 DAZ3Q9NR90 486 aaKnown RBP4.78□□□□□ -1.64
USP54-208ENST00000461520 Q9UF83 564 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 PHLDA3Q9Y5J5 127 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 URGCP-MRPS24S4R325 110 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 HMCN2Q8NDA2 5059 aa4.78□□□□□ -1.64
USP54-208ENST00000461520 TRBV10-1A0A0K0K1A3 114 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 GRIFINA4D1Z8 144 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 G3V3Q6 166 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 M0R036 132 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 LTAP01374 205 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 PRSS1P07477 247 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 TPT1P13693 172 aaKnown RBP4.77□□□□□ -1.65
USP54-208ENST00000461520 HAMPP81172 84 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 WFDC2Q14508 124 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 ZFP82Q8N141 532 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 RMI2Q96E14 147 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 CHCHD7Q9BUK0 85 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 CYTL1Q9NRR1 136 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 DNAH8Q96JB1 4490 aa4.77□□□□□ -1.65
USP54-208ENST00000461520 M0R381 172 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 ARPC5O15511 151 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 S100A9P06702 114 aaKnown RBP4.76□□□□□ -1.65
USP54-208ENST00000461520 ELOBQ15370 118 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 RGS21Q2M5E4 152 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 CST9LP1Q5W188 147 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 Q6ZSA8 131 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 NIT1Q86X76 327 aa4.76□□□□□ -1.65
USP54-208ENST00000461520 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.75□□□□□ -1.65
USP54-208ENST00000461520 TRBV7-3A0A075B6L6 115 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 A0A087WX48 190 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 TMSB15BA0A087X1C1 80 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 LECT2O14960 151 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 PAGE4O60829 102 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 CXCL1P09341 107 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 AKR1C3P42330 323 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 UBE2D3P61077 147 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 UBE2D2P62837 147 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 ZNF345Q14585 488 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 KCNIP4Q6PIL6 250 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 Q8N976 141 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 OR10G8Q8NGN5 311 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 BAALCQ8WXS3 180 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 KLK12Q9UKR0 248 aa4.75□□□□□ -1.65
USP54-208ENST00000461520 IGKV2D-24A0A075B6R9 120 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 RBFOX3A6NFN3 312 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 UMAD1C9J7I0 102 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 RAB4BP61018 213 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 Q0VG73 95 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 ATRAIDQ6UW56 229 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 KCNRGQ8N5I3 272 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms