RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 C17orf77Q96MU5 243 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 I3L2K1 104 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 CRYGCP07315 174 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 CRYGBP07316 175 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 PSMB8P28062 276 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 ATP5EP2Q5VTU8 51 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 KLHL30-AS1Q8NEE0 82 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 ARFGEF3Q5TH69 2177 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 TANC2Q9HCD6 1990 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 TRBV30A0A0K0K1B3 111 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 F6UB75 175 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 OVOL3O00110 214 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 LMO4P61968 165 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 LOXL1Q08397 574 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-202ENST00000460333 AGPAT4-IT1Q9H0P7 198 aa4.77□□□□□ -1.65
VPS13D-202ENST00000460333 TRGV2A0A075B6R0 118 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV1OR15-1A0A075B7D0 117 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 WI2-2373I1.2A0A1W2PRP0 233 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 CCDC179H3BU77 68 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 ZFP36P26651 326 aaKnown RBP4.76□□□□□ -1.65
VPS13D-202ENST00000460333 C6orf226Q5I0X4 101 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 FAM240AA0A1B0GVK7 77 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 JMJD7-PLA2G4BH0Y9G9 81 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV3-11P01762 117 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 SLC25A29Q8N8R3 303 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 C1orf159Q96HA4 380 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 DSCR8Q96T75 97 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 DAZ1Q9NQZ3 744 aaKnown RBP4.76□□□□□ -1.65
VPS13D-202ENST00000460333 NDUFA4O00483 81 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 IGLC6P0CF74 106 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 CXCL5P42830 114 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 HAMPP81172 84 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 RHPN1-AS1Q9BWJ2 59 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 ATP5EP56381 51 aaPredicted RBP4.76□□□□□ -1.65
VPS13D-202ENST00000460333 NDPQ00604 133 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 RITA1Q96K30 269 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 ZMAT4Q9H898 229 aa4.76□□□□□ -1.65
VPS13D-202ENST00000460333 RAI1Q7Z5J4 1906 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-202ENST00000460333 V9GYY9 64 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 HCFC1P51610 2035 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV4-61A0A0C4DH41 118 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 SMIM9A6NGZ8 99 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 MYCNOSP40205 109 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 NEXN-AS1Q8NBZ9 246 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 MSRB1Q9NZV6 116 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 DNAH14Q0VDD8 3507 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 FAM236DA0A1B0GTK5 79 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 TEX22C9J3V5 150 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 M0QXV9 152 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 IGKV1-17P01599 117 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 FAM236CP0DP71 79 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 COX7CP15954 63 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 EBI3Q14213 229 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 NRGNQ92686 78 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 CRLF1O75462 422 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 INSP01308 110 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 SS18Q15532 418 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 LINC00322Q6ZN03 302 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-202ENST00000460333 STHQ8IWL8 128 aa4.75□□□□□ -1.65
VPS13D-202ENST00000460333 TRBV7-3A0A075B6L6 115 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV4-30-2A0A087WSY4 118 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 IGKV2D-26A0A0A0MRZ7 120 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 TRGV4A0A0C4DH28 118 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 MIAQ16674 131 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 C9orf47Q6ZRZ4 202 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 UBE2DNLQ8IWF7 75 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 IGKV3D-7A0A0C4DH55 119 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 COL6A3P12111 3177 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 IGKV1D-37A0A075B6S9 117 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV3-73A0A0B4J1V6 119 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 A0A0J9YY99 117 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 TEX49A0A1B0GTD5 131 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 K7EIM0 57 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 SUMO4Q6EEV6 95 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 RPL39LQ96EH5 51 aaKnown RBP4.74□□□□□ -1.65
VPS13D-202ENST00000460333 Q9H8V8 135 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 MDFICQ9P1T7 246 aa4.74□□□□□ -1.65
VPS13D-202ENST00000460333 TINCRA0A1B0GVN0 87 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 E7EUB6 86 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 COX7A2LO14548 114 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 SERP2Q8N6R1 65 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 MAPKAPK5-AS1Q8N8E1 139 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 DEFB104AQ8WTQ1 72 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 PKD1L2Q7Z442 2459 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 H3BUA1 57 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 ATP6V0E1O15342 81 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV3-33P01772 117 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 RUSC1-AS1Q66K80 236 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 PIP4P2Q8N4L2 257 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV1-58A0A0C4DH39 117 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 A0A0J9YXY3 114 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 FOXE3Q13461 319 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 Q8N9W7 124 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 CLEC2BQ92478 149 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 IGLV11-55A0A075B6I3 123 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV7-81A0A0B4J1V7 117 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 TRAV4A0A0B4J268 109 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 DPH3Q96FX2 82 aa4.73□□□□□ -1.65
VPS13D-202ENST00000460333 A0A0J9YXV3 536 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 NDUFC2-KCTD14E9PQ53 114 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms