RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 IGLC6P0CF74 106 aa13.63□□□□□ -0.23
SDC1-205ENST00000447124 EIF5AL1Q6IS14 154 aaKnown RBP13.63□□□□□ -0.23
SDC1-205ENST00000447124 ATRAIDQ6UW56 229 aa13.63□□□□□ -0.23
SDC1-205ENST00000447124 ENHOQ6UWT2 76 aa13.63□□□□□ -0.23
SDC1-205ENST00000447124 NTM-AS1Q6ZSK4 140 aa13.63□□□□□ -0.23
SDC1-205ENST00000447124 RMI2Q96E14 147 aa13.63□□□□□ -0.23
SDC1-205ENST00000447124 MYCBP2O75592 4640 aa13.62□□□□□ -0.23
SDC1-205ENST00000447124 ELOBQ15370 118 aa13.62□□□□□ -0.23
SDC1-205ENST00000447124 LINC01620Q4KN68 170 aa13.62□□□□□ -0.23
SDC1-205ENST00000447124 OR2D3Q8NGH3 330 aa13.62□□□□□ -0.23
SDC1-205ENST00000447124 TRBV20OR9-2A0A075B6H5 130 aa13.61□□□□□ -0.23
SDC1-205ENST00000447124 MEF2BQ02080 365 aaPredicted RBP13.61□□□□□ -0.23
SDC1-205ENST00000447124 Q6ZSA8 131 aa13.61□□□□□ -0.23
SDC1-205ENST00000447124 DAZAP1Q96EP5 407 aaKnown RBP13.61□□□□□ -0.23
SDC1-205ENST00000447124 MPV17L2Q567V2 206 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 SLC51BQ86UW2 128 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 Q8N976 141 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 FER1L6-AS1Q8NA97 138 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 MED9Q9NWA0 146 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 VAX2Q9UIW0 290 aa13.6□□□□□ -0.23
SDC1-205ENST00000447124 FAM229AH3BQW9 127 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 TEX46H3BTG2 121 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 GNG4P50150 75 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 RPS20P60866 119 aaKnown RBP13.59□□□□□ -0.23
SDC1-205ENST00000447124 KCNIP4Q6PIL6 250 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 Q6ZNX1 250 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 C15orf54Q8N8G6 183 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 TPPP3Q9BW30 176 aa13.59□□□□□ -0.23
SDC1-205ENST00000447124 M0QY20 66 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 PDE6DO43924 150 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 SMIM17P0DL12 118 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 BCL2P10415 239 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 Q0VG73 95 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 AP1S3Q96PC3 154 aa13.58□□□□□ -0.24
SDC1-205ENST00000447124 SMIM12Q96EX1 92 aa13.57□□□□□ -0.24
SDC1-205ENST00000447124 CHCHD5Q9BSY4 110 aa13.57□□□□□ -0.24
SDC1-205ENST00000447124 CACNG7P62955 275 aa13.56□□□□□ -0.24
SDC1-205ENST00000447124 SUMO4Q6EEV6 95 aa13.56□□□□□ -0.24
SDC1-205ENST00000447124 IFNA1P01562 189 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 P01737 135 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 ANGP03950 147 aaKnown RBP13.55□□□□□ -0.24
SDC1-205ENST00000447124 MGPP08493 103 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 LYZL1Q6UWQ5 148 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 NUDT10Q8NFP7 164 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 NUDT11Q96G61 164 aa13.55□□□□□ -0.24
SDC1-205ENST00000447124 DMBT1Q9UGM3 2413 aaPredicted RBP13.55□□□□□ -0.24
SDC1-205ENST00000447124 RBX1P62877 108 aa13.54□□□□□ -0.24
SDC1-205ENST00000447124 GAGE6Q13070 117 aa13.54□□□□□ -0.24
SDC1-205ENST00000447124 TMEM97Q5BJF2 176 aa13.54□□□□□ -0.24
SDC1-205ENST00000447124 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.54□□□□□ -0.24
SDC1-205ENST00000447124 C1orf43Q9BWL3 253 aa13.54□□□□□ -0.24
SDC1-205ENST00000447124 F2Z2F3 143 aa13.53□□□□□ -0.24
SDC1-205ENST00000447124 C9orf62Q8N4C0 152 aa13.53□□□□□ -0.24
SDC1-205ENST00000447124 NTF3P20783 257 aa13.52□□□□□ -0.25
SDC1-205ENST00000447124 IQCJQ1A5X6 159 aa13.52□□□□□ -0.25
SDC1-205ENST00000447124 KRTAP26-1Q6PEX3 210 aa13.52□□□□□ -0.25
SDC1-205ENST00000447124 OCC1Q8TAD7 63 aa13.52□□□□□ -0.25
SDC1-205ENST00000447124 PRR34Q9NV39 138 aa13.52□□□□□ -0.25
SDC1-205ENST00000447124 XKRY2A2RUG3 117 aa13.51□□□□□ -0.25
SDC1-205ENST00000447124 K7EN84 100 aa13.51□□□□□ -0.25
SDC1-205ENST00000447124 CRPP02741 224 aa13.51□□□□□ -0.25
SDC1-205ENST00000447124 BIN3Q9NQY0 253 aa13.51□□□□□ -0.25
SDC1-205ENST00000447124 TRBV25-1A0A075B6N4 114 aa13.5□□□□□ -0.25
SDC1-205ENST00000447124 NKX2-5P52952 324 aaPredicted RBP13.5□□□□□ -0.25
SDC1-205ENST00000447124 PKIAP61925 76 aa13.5□□□□□ -0.25
SDC1-205ENST00000447124 WDR73Q6P4I2 378 aa13.5□□□□□ -0.25
SDC1-205ENST00000447124 LINC00269Q8N2A0 174 aa13.5□□□□□ -0.25
SDC1-205ENST00000447124 IGHV1-24A0A0C4DH33 117 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 H7C1H1 209 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 MIAQ16674 131 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 RASL11AQ6T310 242 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 CLPSL2Q6UWE3 100 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 SCXQ7RTU7 201 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 DEFB104AQ8WTQ1 72 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 RNASE7Q9H1E1 156 aaKnown RBP13.49□□□□□ -0.25
SDC1-205ENST00000447124 DPH3P1Q9H4G8 78 aa13.49□□□□□ -0.25
SDC1-205ENST00000447124 USP17L23D6RBM5 183 aa13.48□□□□□ -0.25
SDC1-205ENST00000447124 TRGC1P0CF51 173 aa13.48□□□□□ -0.25
SDC1-205ENST00000447124 TAGLN2P37802 199 aaKnown RBP13.48□□□□□ -0.25
SDC1-205ENST00000447124 CTRLP40313 264 aa13.48□□□□□ -0.25
SDC1-205ENST00000447124 LINC00528Q8N1L1 170 aa13.48□□□□□ -0.25
SDC1-205ENST00000447124 C20orf203Q8NBC4 194 aa13.47□□□□□ -0.25
SDC1-205ENST00000447124 CHAC1Q9BUX1 264 aa13.47□□□□□ -0.25
SDC1-205ENST00000447124 CNFNQ9BYD5 112 aa13.47□□□□□ -0.25
SDC1-205ENST00000447124 NIT2Q9NQR4 276 aa13.47□□□□□ -0.25
SDC1-205ENST00000447124 hCG_2014768A0A024R1R8 64 aa13.46□□□□□ -0.25
SDC1-205ENST00000447124 HLA-DQA1P01909 254 aa13.46□□□□□ -0.25
SDC1-205ENST00000447124 PRSS1P07477 247 aa13.46□□□□□ -0.25
SDC1-205ENST00000447124 C14orf177Q52M58 125 aa13.46□□□□□ -0.25
SDC1-205ENST00000447124 ALKAL2Q6UX46 152 aa13.46□□□□□ -0.25
SDC1-205ENST00000447124 RPP21Q9H633 154 aaKnown RBP13.46□□□□□ -0.25
SDC1-205ENST00000447124 TWIST1Q15672 202 aa13.45□□□□□ -0.26
SDC1-205ENST00000447124 AKAP14Q86UN6 197 aa13.45□□□□□ -0.26
SDC1-205ENST00000447124 CIRBP-AS1Q8TBR5 109 aa13.45□□□□□ -0.26
SDC1-205ENST00000447124 GTSF1Q8WW33 167 aa13.45□□□□□ -0.26
SDC1-205ENST00000447124 GFRA4Q9GZZ7 299 aa13.45□□□□□ -0.26
SDC1-205ENST00000447124 IGLV4-60A0A075B6I1 120 aa13.44□□□□□ -0.26
SDC1-205ENST00000447124 FOXA3P55318 350 aaPredicted RBP13.44□□□□□ -0.26
SDC1-205ENST00000447124 LYPD6BQ8NI32 183 aa13.44□□□□□ -0.26
SDC1-205ENST00000447124 A0A1B0GUV1 79 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms