RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RPL13AP40429 203 aaKnown RBP8.91□□□□□ -0.98
MSH6-204ENST00000445503 CEMP1Q6PRD7 247 aaPredicted RBP8.91□□□□□ -0.98
MSH6-204ENST00000445503 C10orf126Q8N4M7 172 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 TIMM21Q9BVV7 248 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 LRRK2Q5S007 2527 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 A0A1W2PRX2 142 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 TRGV11A0A075B6L2 103 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 P0DMU3 169 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 FAM231AP0DMU4 169 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 FAM231CP0DMU5 169 aa8.91□□□□□ -0.98
MSH6-204ENST00000445503 I3L3M4 83 aa8.9□□□□□ -0.98
MSH6-204ENST00000445503 OR13C6PQ8NH95 151 aa8.9□□□□□ -0.98
MSH6-204ENST00000445503 SNCGO76070 127 aa8.9□□□□□ -0.98
MSH6-204ENST00000445503 FOXI1Q12951 378 aa8.9□□□□□ -0.98
MSH6-204ENST00000445503 ASH1LQ9NR48 2969 aaKnown RBP8.9□□□□□ -0.99
MSH6-204ENST00000445503 PRM2P04554 102 aa8.9□□□□□ -0.99
MSH6-204ENST00000445503 TCTEX1D4Q5JR98 221 aa8.9□□□□□ -0.99
MSH6-204ENST00000445503 GPHB5Q86YW7 130 aa8.9□□□□□ -0.99
MSH6-204ENST00000445503 IGHV3-53P01767 116 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 ZNF575Q86XF7 245 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 NDUFA11Q86Y39 141 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 MUSTN1Q8IVN3 82 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 PPDPFLQ8WWR9 84 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 C1QTNF4Q9BXJ3 329 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 A0A0J9YY99 117 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 HIST2H2BDQ6DRA6 164 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 MEIG1Q5JSS6 88 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 UBE2E2Q96LR5 201 aa8.89□□□□□ -0.99
MSH6-204ENST00000445503 TCL1BO95988 128 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 C10orf105Q8TEF2 133 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 ABCA12Q86UK0 2595 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 ABCA2Q9BZC7 2435 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 A6NDX4 124 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 SLC25A20O43772 301 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.88□□□□□ -0.99
MSH6-204ENST00000445503 IGKV2-29A2NJV5 120 aaPredicted RBP8.88□□□□□ -0.99
MSH6-204ENST00000445503 MORN3Q6PF18 240 aaPredicted RBP8.88□□□□□ -0.99
MSH6-204ENST00000445503 SHISA2Q6UWI4 295 aa8.88□□□□□ -0.99
MSH6-204ENST00000445503 TRBV20-1A0A075B6N2 111 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 TRAV8-3A0A0A6YYJ7 113 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 H3BUA1 57 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 CSMD1Q96PZ7 3565 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 CFC1BP0CG36 223 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 CFC1P0CG37 223 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 MED14OSP0DP75 135 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 HOXD3P31249 432 aaPredicted RBP8.87□□□□□ -0.99
MSH6-204ENST00000445503 PROK1P58294 105 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 XCL2Q9UBD3 114 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 NDUFA12Q9UI09 145 aa8.87□□□□□ -0.99
MSH6-204ENST00000445503 ZNRF2Q8NHG8 242 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 NTN5Q8WTR8 489 aaPredicted RBP8.86□□□□□ -0.99
MSH6-204ENST00000445503 TIMM17AQ99595 171 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.86□□□□□ -0.99
MSH6-204ENST00000445503 M0R2P5 195 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 IGHV4OR15-8A0A075B7B6 117 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 A0A087WW49 117 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 A0A0J9YX75 114 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 RNF223E7ERA6 249 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 CIRBPQ14011 172 aaKnown RBP8.86□□□□□ -0.99
MSH6-204ENST00000445503 MRPL23Q16540 153 aaKnown RBP8.86□□□□□ -0.99
MSH6-204ENST00000445503 ANKRD29Q8N6D5 301 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 DAND5Q8N907 189 aa8.86□□□□□ -0.99
MSH6-204ENST00000445503 SLURP1P55000 103 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 TSPEAR-AS2P59090 65 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 TRAV13-1A0A0B4J241 112 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 LINC01546A6NGU7 62 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 POLR2KP53803 58 aaKnown RBP8.85□□□□□ -0.99
MSH6-204ENST00000445503 C2orf82Q6UX34 121 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 PKD1L2Q7Z442 2459 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 AVPP01185 164 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 MT-ATP8P03928 68 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 ZFAND6Q6FIF0 208 aa8.85□□□□□ -0.99
MSH6-204ENST00000445503 LEPROTO15243 131 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 ATXN8Q156A1 80 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 TEN1Q86WV5 123 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 APRG1Q8IVJ8 170 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 C20orf203Q8NBC4 194 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 TOMM7Q9P0U1 55 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 SOCS3O14543 225 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 TRGV1A0A0A0MS02 117 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 IGIPA6NJ69 53 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 CRYGDP07320 174 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 GAGE2BQ13066 116 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 GAGE5Q13069 117 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 GAGE6Q13070 117 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 RHOHQ15669 191 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 GAGE2EQ4V326 116 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 SLC25A29Q8N8R3 303 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 GAGE2DQ9UEU5 116 aa8.84□□□□□ -0.99
MSH6-204ENST00000445503 A8MZ25 164 aa8.83□□□□□ -1
MSH6-204ENST00000445503 M0QY20 66 aa8.83□□□□□ -1
MSH6-204ENST00000445503 RHODO00212 210 aa8.83□□□□□ -1
MSH6-204ENST00000445503 PRRC2AP48634 2157 aaKnown RBP8.83□□□□□ -1
MSH6-204ENST00000445503 IGLV4-69A0A075B6H9 119 aa8.83□□□□□ -1
MSH6-204ENST00000445503 TRBV7-9A0A0J9YWB2 115 aa8.83□□□□□ -1
MSH6-204ENST00000445503 TMEM262E9PQX1 116 aa8.83□□□□□ -1
MSH6-204ENST00000445503 TSHBP01222 138 aa8.83□□□□□ -1
MSH6-204ENST00000445503 C3orf56Q8N813 242 aa8.83□□□□□ -1
MSH6-204ENST00000445503 ZNF580Q9UK33 172 aa8.83□□□□□ -1
MSH6-204ENST00000445503 TRAV8-4A0A0B4J246 113 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms