RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 KRTAP10-1P60331 282 aa13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 Q8N814 137 aa13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 RMI2Q96E14 147 aa13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 AP1S3Q96PC3 154 aa13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 SEC11CQ9BY50 192 aa13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 EIF5A2Q9GZV4 153 aaKnown RBP13.27□□□□□ -0.29
SHROOM1-204ENST00000440118 F8W036 122 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 SNAPINO95295 136 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 RPS20P60866 119 aaKnown RBP13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 UBE2D3P61077 147 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 UBE2D2P62837 147 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 NIT1Q86X76 327 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 OR2D3Q8NGH3 330 aa13.25□□□□□ -0.29
SHROOM1-204ENST00000440118 BCL2P10415 239 aa13.24□□□□□ -0.29
SHROOM1-204ENST00000440118 ELOBQ15370 118 aa13.24□□□□□ -0.29
SHROOM1-204ENST00000440118 SSBP4Q9BWG4 385 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-204ENST00000440118 KLK12Q9UKR0 248 aa13.24□□□□□ -0.29
SHROOM1-204ENST00000440118 COX11Q9Y6N1 276 aa13.24□□□□□ -0.29
SHROOM1-204ENST00000440118 XKRY2A2RUG3 117 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 EPM2AB3EWF7 344 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 TMEM262E9PQX1 116 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 P01737 135 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 APOC3P02656 99 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 MGPP08493 103 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 GZMBP10144 247 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 FER1L6-AS1Q8NA97 138 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 NEXN-AS1Q8NBZ9 246 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 OR10G8Q8NGN5 311 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 SMIM12Q96EX1 92 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 BIN3Q9NQY0 253 aa13.23□□□□□ -0.29
SHROOM1-204ENST00000440118 IGKV2D-24A0A075B6R9 120 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 RBFOX3A6NFN3 312 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 LECT2O14960 151 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 UBE2WQ96B02 151 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 CHCHD7Q9BUK0 85 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 VAX2Q9UIW0 290 aa13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 CARHSP1Q9Y2V2 147 aaKnown RBP13.22□□□□□ -0.29
SHROOM1-204ENST00000440118 C10orf91Q5T1B1 145 aa13.21□□□□□ -0.29
SHROOM1-204ENST00000440118 CRPP02741 224 aa13.2□□□□□ -0.3
SHROOM1-204ENST00000440118 CACNG7P62955 275 aa13.2□□□□□ -0.3
SHROOM1-204ENST00000440118 FRZBQ92765 325 aa13.2□□□□□ -0.3
SHROOM1-204ENST00000440118 CHCHD5Q9BSY4 110 aa13.2□□□□□ -0.3
SHROOM1-204ENST00000440118 TRBV6-8A0A0A6YYG3 113 aa13.19□□□□□ -0.3
SHROOM1-204ENST00000440118 IGLV2-8P01709 118 aa13.19□□□□□ -0.3
SHROOM1-204ENST00000440118 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 H7C1H1 209 aa13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 XGP55808 180 aa13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 PKIAP61925 76 aa13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 TMEM97Q5BJF2 176 aa13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 BAALCQ8WXS3 180 aa13.18□□□□□ -0.3
SHROOM1-204ENST00000440118 C19orf71A6NCJ1 209 aa13.17□□□□□ -0.3
SHROOM1-204ENST00000440118 IGLC6P0CF74 106 aa13.17□□□□□ -0.3
SHROOM1-204ENST00000440118 WFDC2Q14508 124 aa13.17□□□□□ -0.3
SHROOM1-204ENST00000440118 C15orf54Q8N8G6 183 aa13.17□□□□□ -0.3
SHROOM1-204ENST00000440118 F2Z2F3 143 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 TRGC1P0CF51 173 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 HAMPP81172 84 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 Q0VG73 95 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 TMEM70Q9BUB7 260 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 C1orf43Q9BWL3 253 aa13.16□□□□□ -0.3
SHROOM1-204ENST00000440118 TRBV20OR9-2A0A075B6H5 130 aa13.15□□□□□ -0.3
SHROOM1-204ENST00000440118 ANGP03950 147 aaKnown RBP13.15□□□□□ -0.3
SHROOM1-204ENST00000440118 FAM74A3Q4VXF1 159 aa13.15□□□□□ -0.3
SHROOM1-204ENST00000440118 Q5VSD8 79 aa13.15□□□□□ -0.3
SHROOM1-204ENST00000440118 DNAJC30Q96LL9 226 aa13.15□□□□□ -0.3
SHROOM1-204ENST00000440118 MPV17L2Q567V2 206 aa13.14□□□□□ -0.31
SHROOM1-204ENST00000440118 KIF25-AS1Q9Y6Z4 181 aa13.14□□□□□ -0.31
SHROOM1-204ENST00000440118 TRBV25-1A0A075B6N4 114 aa13.13□□□□□ -0.31
SHROOM1-204ENST00000440118 SMR3BP02814 79 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-204ENST00000440118 SUMO4Q6EEV6 95 aa13.13□□□□□ -0.31
SHROOM1-204ENST00000440118 LYZL1Q6UWQ5 148 aa13.13□□□□□ -0.31
SHROOM1-204ENST00000440118 CEBPGP53567 150 aa13.12□□□□□ -0.31
SHROOM1-204ENST00000440118 Q8N976 141 aa13.12□□□□□ -0.31
SHROOM1-204ENST00000440118 DPH3P1Q9H4G8 78 aa13.12□□□□□ -0.31
SHROOM1-204ENST00000440118 RPP21Q9H633 154 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-204ENST00000440118 TMEM250H0YL14 139 aa13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 PNRC1Q12796 327 aaPredicted RBP13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 GAGE6Q13070 117 aa13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 RHEBQ15382 184 aa13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 NUDT10Q8NFP7 164 aa13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 NUDT11Q96G61 164 aa13.11□□□□□ -0.31
SHROOM1-204ENST00000440118 IGHV1-24A0A0C4DH33 117 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 FAM229AH3BQW9 127 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 M0QY20 66 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 HLA-DQA1P01909 254 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 TWIST1Q15672 202 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 RASL11AQ6T310 242 aa13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 RNASE7Q9H1E1 156 aaKnown RBP13.1□□□□□ -0.31
SHROOM1-204ENST00000440118 NTF3P20783 257 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 CTRLP40313 264 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 SRSF3P84103 164 aaKnown RBP13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 C14orf177Q52M58 125 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 ATRAIDQ6UW56 229 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 CLPSL2Q6UWE3 100 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 CLRN3Q8NCR9 226 aa13.09□□□□□ -0.31
SHROOM1-204ENST00000440118 SRP19P09132 144 aaKnown RBP13.08□□□□□ -0.32
SHROOM1-204ENST00000440118 INAFM2P0DMQ5 153 aa13.08□□□□□ -0.32
SHROOM1-204ENST00000440118 MIAQ16674 131 aa13.08□□□□□ -0.32
SHROOM1-204ENST00000440118 NTM-AS1Q6ZSK4 140 aa13.08□□□□□ -0.32
SHROOM1-204ENST00000440118 OCC1Q8TAD7 63 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms