RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 C17orf77Q96MU5 243 aa11.17□□□□□ -0.62
PTPN13-203ENST00000427191 WI2-2373I1.2A0A1W2PRP0 233 aa11.16□□□□□ -0.62
PTPN13-203ENST00000427191 SPG11Q96JI7 2443 aa11.16□□□□□ -0.62
PTPN13-203ENST00000427191 IGHV7-81A0A0B4J1V7 117 aa11.16□□□□□ -0.62
PTPN13-203ENST00000427191 A0A0J9YXY3 114 aa11.16□□□□□ -0.62
PTPN13-203ENST00000427191 MIR7-3HGQ8N6C7 128 aa11.16□□□□□ -0.62
PTPN13-203ENST00000427191 PCDH15Q96QU1 1955 aa11.15□□□□□ -0.62
PTPN13-203ENST00000427191 F8W735 103 aaPredicted RBP11.15□□□□□ -0.62
PTPN13-203ENST00000427191 CTSGP08311 255 aa11.15□□□□□ -0.63
PTPN13-203ENST00000427191 DEFB112Q30KQ8 113 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 C3orf22Q8N5N4 141 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 CLEC2BQ92478 149 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 COL4A6Q14031 1691 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 NOTCH4Q99466 2003 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 C2orf70A6NJV1 201 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 C5orf56Q8N8D9 126 aa11.14□□□□□ -0.63
PTPN13-203ENST00000427191 IGKV1-17P01599 117 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 IGHV3-30P01768 117 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 IGHV3-33P01772 117 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 IGHV4-59P01825 116 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 IGHV3-30-3P0DP02 117 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 IGHV3-30-5P0DP03 117 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 PROK2Q9HC23 129 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 MYCNOSP40205 109 aa11.13□□□□□ -0.63
PTPN13-203ENST00000427191 PRR30Q53SZ7 412 aaPredicted RBP11.12□□□□□ -0.63
PTPN13-203ENST00000427191 PRO0255Q9UI72 69 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 C20orf203Q8NBC4 194 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 GATA1P15976 413 aaPredicted RBP11.12□□□□□ -0.63
PTPN13-203ENST00000427191 GTSF1Q8WW33 167 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 SLURP1P55000 103 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 KRTAP27-1Q3LI81 207 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 PRSS33Q8NF86 280 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 AGRNO00468 2067 aa11.12□□□□□ -0.63
PTPN13-203ENST00000427191 AJUBAQ96IF1 538 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 FAM167A-AS1Q96KT0 104 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 RPL39P62891 51 aaKnown RBP11.11□□□□□ -0.63
PTPN13-203ENST00000427191 DIAPH2-AS1Q14236 149 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 APRG1Q8IVJ8 170 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 FAM215AQ9Y5M1 114 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 DEFB113Q30KQ7 82 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 PRB1P04280 392 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 ANKHD1Q8IWZ3 2542 aaKnown RBP11.11□□□□□ -0.63
PTPN13-203ENST00000427191 TRAV23DV6A0A075B6W5 121 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 SMIM9A6NGZ8 99 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 P0DMU3 169 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 FAM231AP0DMU4 169 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 FAM231CP0DMU5 169 aa11.11□□□□□ -0.63
PTPN13-203ENST00000427191 SPRY4Q9C004 299 aa11.1□□□□□ -0.63
PTPN13-203ENST00000427191 NUP210LQ5VU65 1888 aa11.1□□□□□ -0.63
PTPN13-203ENST00000427191 IGF2-ASQ6U949 168 aa11.1□□□□□ -0.63
PTPN13-203ENST00000427191 TCL1BO95988 128 aa11.1□□□□□ -0.63
PTPN13-203ENST00000427191 DAND5Q8N907 189 aa11.1□□□□□ -0.63
PTPN13-203ENST00000427191 TRAV26-1A0A087WT03 109 aa11.09□□□□□ -0.63
PTPN13-203ENST00000427191 RNF183Q96D59 192 aa11.09□□□□□ -0.63
PTPN13-203ENST00000427191 RSPO1Q2MKA7 263 aaPredicted RBP11.09□□□□□ -0.63
PTPN13-203ENST00000427191 RNASE8Q8TDE3 154 aaKnown RBP11.09□□□□□ -0.63
PTPN13-203ENST00000427191 PRB2P02812 416 aaPredicted RBP11.09□□□□□ -0.63
PTPN13-203ENST00000427191 MRPS36P82909 103 aaKnown RBP11.09□□□□□ -0.63
PTPN13-203ENST00000427191 IBA57-AS1B1ANH7 110 aa11.08□□□□□ -0.63
PTPN13-203ENST00000427191 Q6ZSR3 168 aa11.08□□□□□ -0.63
PTPN13-203ENST00000427191 SLX1AQ9BQ83 275 aa11.08□□□□□ -0.64
PTPN13-203ENST00000427191 CSPG4Q6UVK1 2322 aa11.08□□□□□ -0.64
PTPN13-203ENST00000427191 C11orf53Q8IXP5 236 aa11.08□□□□□ -0.64
PTPN13-203ENST00000427191 ZNF503-AS2A6NEH8 195 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 DEFB136Q30KP8 78 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 IGKV2D-26A0A0A0MRZ7 120 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 ZNF706Q9Y5V0 76 aaPredicted RBP11.07□□□□□ -0.64
PTPN13-203ENST00000427191 ZFAND2AQ8N6M9 145 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 ARTNQ5T4W7 220 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 ATG2AQ2TAZ0 1938 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 MUC7Q8TAX7 377 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 CTSZQ9UBR2 303 aa11.07□□□□□ -0.64
PTPN13-203ENST00000427191 HIVEP2P31629 2446 aa11.06□□□□□ -0.64
PTPN13-203ENST00000427191 SMAD5-AS1Q9Y6J3 95 aa11.06□□□□□ -0.64
PTPN13-203ENST00000427191 KLK12Q9UKR0 248 aa11.06□□□□□ -0.64
PTPN13-203ENST00000427191 WISP1O95388 367 aa11.06□□□□□ -0.64
PTPN13-203ENST00000427191 NFE4Q86UQ8 179 aa11.06□□□□□ -0.64
PTPN13-203ENST00000427191 C19orf71A6NCJ1 209 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 TIMM17BO60830 172 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 IGLV2-23P01705 113 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 C20orf197Q8N268 126 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 SERP1Q9Y6X1 66 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 Q8N9W7 124 aa11.05□□□□□ -0.64
PTPN13-203ENST00000427191 A0A0J9YX75 114 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 PLA2G2CQ5R387 149 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 LINC00173Q6ZV60 143 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 FAM19A3Q7Z5A8 133 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 SERP2Q8N6R1 65 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 C20orf173Q96LM9 149 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 PCNX3Q9H6A9 2034 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 IGHV4OR15-8A0A075B7B6 117 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 A0A087WW49 117 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 TRBV30A0A0K0K1B3 111 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 FAM222AQ5U5X8 452 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 NDUFA7O95182 113 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 MPLKIPQ8TAP9 179 aa11.04□□□□□ -0.64
PTPN13-203ENST00000427191 TDRG1Q3Y452 100 aa11.03□□□□□ -0.64
PTPN13-203ENST00000427191 MSRB1Q9NZV6 116 aa11.03□□□□□ -0.64
PTPN13-203ENST00000427191 SONP18583 2426 aaKnown RBP11.03□□□□□ -0.64
PTPN13-203ENST00000427191 IGLC6P0CF74 106 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms