RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 NACAE9PAV3 2078 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 AKAP9Q99996 3911 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 TMEM238LA0A1B0GVL6 79 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 A6NJY4 79 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 CHD6Q8TD26 2715 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 PTPN13Q12923 2485 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 NF1P21359 2839 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 TRBV6-5A0A0K0K1A5 114 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 PAPPA-AS1Q5QFB9 102 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 SYT8Q8NBV8 401 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 RBMY1A1P0DJD3 496 aaKnown RBP11.66□□□□□ -0.54
CDH1-202ENST00000422392 RBMY1CP0DJD4 496 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 PSMB2P49721 201 aa11.66□□□□□ -0.54
CDH1-202ENST00000422392 RBMY1FQ15415 496 aaKnown RBP11.66□□□□□ -0.54
CDH1-202ENST00000422392 TGFAP01135 160 aa11.65□□□□□ -0.54
CDH1-202ENST00000422392 PROK1P58294 105 aa11.65□□□□□ -0.54
CDH1-202ENST00000422392 DEFB136Q30KP8 78 aa11.65□□□□□ -0.54
CDH1-202ENST00000422392 J3QQQ9 107 aa11.65□□□□□ -0.55
CDH1-202ENST00000422392 SMCPP49901 116 aaPredicted RBP11.65□□□□□ -0.55
CDH1-202ENST00000422392 NDUFA11Q86Y39 141 aa11.65□□□□□ -0.55
CDH1-202ENST00000422392 AMELXQ99217 191 aa11.65□□□□□ -0.55
CDH1-202ENST00000422392 ZNF580Q9UK33 172 aa11.65□□□□□ -0.55
CDH1-202ENST00000422392 WNK1Q9H4A3 2382 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 GAGE12HA6NDE8 117 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 KNCNA6PVL3 124 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 IGHV3-30P01768 117 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 IGHV3-30-5P0DP03 117 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 AZU1P20160 251 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 HOXD3P31249 432 aaPredicted RBP11.64□□□□□ -0.55
CDH1-202ENST00000422392 SMAGPQ0VAQ4 97 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 SAMD13Q5VXD3 122 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 HIST2H2BDQ6DRA6 164 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 ODF3Q96PU9 254 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 PRRC2AP48634 2157 aaKnown RBP11.64□□□□□ -0.55
CDH1-202ENST00000422392 C18orf65Q6ZTR6 163 aa11.64□□□□□ -0.55
CDH1-202ENST00000422392 ZNF418Q8TF45 676 aaPredicted RBP11.64□□□□□ -0.55
CDH1-202ENST00000422392 CFC1BP0CG36 223 aa11.63□□□□□ -0.55
CDH1-202ENST00000422392 CFC1P0CG37 223 aa11.63□□□□□ -0.55
CDH1-202ENST00000422392 TRPT1Q86TN4 253 aaKnown RBP11.63□□□□□ -0.55
CDH1-202ENST00000422392 SLC25A29Q8N8R3 303 aa11.63□□□□□ -0.55
CDH1-202ENST00000422392 DLX4Q92988 240 aaPredicted RBP11.63□□□□□ -0.55
CDH1-202ENST00000422392 PTH2Q96A98 100 aa11.63□□□□□ -0.55
CDH1-202ENST00000422392 Q9UF83 564 aa11.63□□□□□ -0.55
CDH1-202ENST00000422392 NIPBLQ6KC79 2804 aaeCLIP11.62□□□□□ -0.55
CDH1-202ENST00000422392 LGALS3P17931 250 aaKnown RBP11.62□□□□□ -0.55
CDH1-202ENST00000422392 NSUN5P1Q3KNT7 163 aa11.62□□□□□ -0.55
CDH1-202ENST00000422392 A0A0J9YXV3 536 aa11.62□□□□□ -0.55
CDH1-202ENST00000422392 CFAP126Q5VTH2 177 aa11.62□□□□□ -0.55
CDH1-202ENST00000422392 LINC01356Q8N9X3 169 aa11.62□□□□□ -0.55
CDH1-202ENST00000422392 C20orf203Q8NBC4 194 aa11.62□□□□□ -0.55
CDH1-202ENST00000422392 CEMP1Q6PRD7 247 aaPredicted RBP11.61□□□□□ -0.55
CDH1-202ENST00000422392 ZNF462Q96JM2 2506 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 NOTCH3Q9UM47 2321 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 EPG5Q9HCE0 2579 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 I3L3M4 83 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 J3QR89 54 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 SLURP1P55000 103 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 RNASE13Q5GAN3 156 aaKnown RBP11.61□□□□□ -0.55
CDH1-202ENST00000422392 TCTEX1D4Q5JR98 221 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 DUX3Q96PT4 197 aa11.61□□□□□ -0.55
CDH1-202ENST00000422392 BEX4Q9NWD9 120 aaPredicted RBP11.61□□□□□ -0.55
CDH1-202ENST00000422392 GATA3P23771 443 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 UBE2D3P61077 147 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 UBE2D2P62837 147 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 SIGMAR1Q99720 223 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 IGLV4-3A0A075B6K6 122 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 TMEM223A0PJW6 202 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 ZNF22P17026 224 aaPredicted RBP11.6□□□□□ -0.55
CDH1-202ENST00000422392 RHOHQ15669 191 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 NFE4Q86UQ8 179 aa11.6□□□□□ -0.55
CDH1-202ENST00000422392 CR1P17927 2039 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 TCL1BO95988 128 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 DEFB131AP59861 70 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 SONP18583 2426 aaKnown RBP11.59□□□□□ -0.55
CDH1-202ENST00000422392 ADARB2-AS1A8MUL3 147 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 ZNF702PQ9H963 129 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 VPREB3Q9UKI3 123 aa11.59□□□□□ -0.55
CDH1-202ENST00000422392 A0A096LNT2 108 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 TRAV2A0A0B4J234 112 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 RHODO00212 210 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 EIF4EBP3O60516 100 aaPredicted RBP11.58□□□□□ -0.56
CDH1-202ENST00000422392 RAX2Q96IS3 184 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 VCX2Q9H322 139 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 NAV2Q8IVL1 2488 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 NBPF19A0A087WUL8 3843 aa11.58□□□□□ -0.56
CDH1-202ENST00000422392 TRGV11A0A075B6L2 103 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 A4D1N5 150 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 H7C2G1 150 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 FOXI1Q12951 378 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 C10orf126Q8N4M7 172 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 SPATA25Q9BR10 227 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 SPXQ9BT56 116 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 SETD2Q9BYW2 2564 aaPredicted RBP11.57□□□□□ -0.56
CDH1-202ENST00000422392 RBMY1BA6NDE4 496 aaKnown RBP11.57□□□□□ -0.56
CDH1-202ENST00000422392 RBMY1EA6NEQ0 496 aaKnown RBP11.57□□□□□ -0.56
CDH1-202ENST00000422392 LEPROTO15243 131 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 RBMY1DP0C7P1 496 aaKnown RBP11.57□□□□□ -0.56
CDH1-202ENST00000422392 FAM104AQ969W3 186 aa11.57□□□□□ -0.56
CDH1-202ENST00000422392 TMEM89A2RUT3 159 aa11.56□□□□□ -0.56
CDH1-202ENST00000422392 C1QTNF4Q9BXJ3 329 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms