RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ALMS1Q8TCU4 4167 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 TRBV10-1A0A0K0K1A3 114 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 S100PP25815 95 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 ELOBQ15370 118 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 ESRGQ1W209 222 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 ZNRF2Q8NHG8 242 aa11.02□□□□□ -0.64
HMGA1-204ENST00000401473 LINC00694P0DN24 101 aa11.02□□□□□ -0.65
HMGA1-204ENST00000401473 RYR2Q92736 4967 aa11.01□□□□□ -0.65
HMGA1-204ENST00000401473 TRBV7-3A0A075B6L6 115 aa11.01□□□□□ -0.65
HMGA1-204ENST00000401473 TRAV9-1A0A075B6T8 112 aa11.01□□□□□ -0.65
HMGA1-204ENST00000401473 SRIP30626 198 aa11.01□□□□□ -0.65
HMGA1-204ENST00000401473 NEGR1Q7Z3B1 354 aa11.01□□□□□ -0.65
HMGA1-204ENST00000401473 TGIF2-C20orf24A0A0A6YYL0 155 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 MRPL51Q4U2R6 128 aaKnown RBP11□□□□□ -0.65
HMGA1-204ENST00000401473 RASL11AQ6T310 242 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 CBLN2Q8IUK8 224 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 RPL39LQ96EH5 51 aaKnown RBP11□□□□□ -0.65
HMGA1-204ENST00000401473 YPEL4Q96NS1 127 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 SMKR1H3BMG3 65 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 S100A8P05109 93 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 RPS10P46783 165 aaKnown RBP11□□□□□ -0.65
HMGA1-204ENST00000401473 LYPD5Q6UWN5 251 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 NIT2Q9NQR4 276 aa11□□□□□ -0.65
HMGA1-204ENST00000401473 RPL36AP83881 106 aaKnown RBP10.99□□□□□ -0.65
HMGA1-204ENST00000401473 TMEM136Q6ZRR5 245 aa10.99□□□□□ -0.65
HMGA1-204ENST00000401473 LINC00476Q8WZB0 136 aa10.99□□□□□ -0.65
HMGA1-204ENST00000401473 RPL36ALQ969Q0 106 aaKnown RBP10.99□□□□□ -0.65
HMGA1-204ENST00000401473 LINC00588Q9Y4M8 146 aa10.99□□□□□ -0.65
HMGA1-204ENST00000401473 H7C1H1 209 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 UBE2D3P61077 147 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 UBE2D2P62837 147 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 ATP6V0E2Q8NHE4 81 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 LCE6AA0A183 80 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 NCR2O95944 276 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 FRZBQ92765 325 aa10.98□□□□□ -0.65
HMGA1-204ENST00000401473 TRBV24-1A0A075B6N3 115 aa10.97□□□□□ -0.65
HMGA1-204ENST00000401473 LGALS9CQ6DKI2 356 aa10.97□□□□□ -0.65
HMGA1-204ENST00000401473 MRAP2Q96G30 205 aa10.97□□□□□ -0.65
HMGA1-204ENST00000401473 SMCO4Q9NRQ5 59 aa10.97□□□□□ -0.65
HMGA1-204ENST00000401473 TNFRSF18Q9Y5U5 241 aa10.97□□□□□ -0.65
HMGA1-204ENST00000401473 IGHV3-38A0A0C4DH36 116 aa10.96□□□□□ -0.65
HMGA1-204ENST00000401473 SCO1O75880 301 aa10.96□□□□□ -0.65
HMGA1-204ENST00000401473 NRACQ8N912 160 aa10.96□□□□□ -0.65
HMGA1-204ENST00000401473 DNAJC30Q96LL9 226 aa10.96□□□□□ -0.65
HMGA1-204ENST00000401473 LY6G6CO95867 125 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 CCL18P55774 89 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 SH2D6Q7Z4S9 175 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 GTSF1LQ9H1H1 148 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 D6R8Y8 96 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 CKS2P33552 79 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 DEFB104AQ8WTQ1 72 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 GNB1LQ9BYB4 327 aa10.95□□□□□ -0.66
HMGA1-204ENST00000401473 TRBV6-5A0A0K0K1A5 114 aa10.93□□□□□ -0.66
HMGA1-204ENST00000401473 OR10J3Q5JRS4 329 aa10.93□□□□□ -0.66
HMGA1-204ENST00000401473 KIAA1644Q3SXP7 199 aa10.93□□□□□ -0.66
HMGA1-204ENST00000401473 NTM-AS1Q6ZSK4 140 aa10.93□□□□□ -0.66
HMGA1-204ENST00000401473 DAZ4Q86SG3 579 aaKnown RBP10.93□□□□□ -0.66
HMGA1-204ENST00000401473 DAZ3Q9NR90 486 aaKnown RBP10.93□□□□□ -0.66
HMGA1-204ENST00000401473 SDHAF1A6NFY7 115 aa10.92□□□□□ -0.66
HMGA1-204ENST00000401473 POLR2KP53803 58 aaKnown RBP10.92□□□□□ -0.66
HMGA1-204ENST00000401473 TNFRSF6BO95407 300 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 NPYP01303 97 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 HLA-DQA1P01909 254 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 PPBPP02775 128 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 TIRAPP58753 221 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 UBE2DNLQ8IWF7 75 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 ORMDL3Q8N138 153 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 TMEM70Q9BUB7 260 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 MRPS16Q9Y3D3 137 aaKnown RBP10.91□□□□□ -0.66
HMGA1-204ENST00000401473 APCSP02743 223 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 UPK3BQ9BT76 320 aa10.91□□□□□ -0.66
HMGA1-204ENST00000401473 COX19Q49B96 90 aa10.9□□□□□ -0.66
HMGA1-204ENST00000401473 LELP1Q5T871 98 aa10.9□□□□□ -0.66
HMGA1-204ENST00000401473 WFDC10BQ8IUB3 73 aa10.9□□□□□ -0.66
HMGA1-204ENST00000401473 PRELID3AQ96N28 172 aa10.9□□□□□ -0.66
HMGA1-204ENST00000401473 ST20Q9HBF5 79 aa10.9□□□□□ -0.66
HMGA1-204ENST00000401473 DNAH6Q9C0G6 4158 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 TRBV6-8A0A0A6YYG3 113 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 COLCA2A8K830 154 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 SUMO2P61956 95 aaKnown RBP10.89□□□□□ -0.67
HMGA1-204ENST00000401473 MRPL18Q9H0U6 180 aaKnown RBP10.89□□□□□ -0.67
HMGA1-204ENST00000401473 Q9H8V8 135 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 TRBV27A0A0K0K1C4 114 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 PPP1R17O96001 155 aa10.89□□□□□ -0.67
HMGA1-204ENST00000401473 DNAH2Q9P225 4427 aa10.88□□□□□ -0.67
HMGA1-204ENST00000401473 MT-ND6P03923 174 aa10.88□□□□□ -0.67
HMGA1-204ENST00000401473 FABP9Q0Z7S8 132 aa10.88□□□□□ -0.67
HMGA1-204ENST00000401473 TRAPPC1Q9Y5R8 145 aa10.88□□□□□ -0.67
HMGA1-204ENST00000401473 C20orf78Q9BR46 151 aa10.87□□□□□ -0.67
HMGA1-204ENST00000401473 I3L3M4 83 aa10.87□□□□□ -0.67
HMGA1-204ENST00000401473 PHOX2AO14813 284 aa10.87□□□□□ -0.67
HMGA1-204ENST00000401473 PMCHP20382 165 aa10.87□□□□□ -0.67
HMGA1-204ENST00000401473 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.87□□□□□ -0.67
HMGA1-204ENST00000401473 DNAH10Q8IVF4 4471 aa10.86□□□□□ -0.67
HMGA1-204ENST00000401473 IGLV2-18A0A075B6J9 118 aa10.86□□□□□ -0.67
HMGA1-204ENST00000401473 VCYO14598 125 aa10.86□□□□□ -0.67
HMGA1-204ENST00000401473 Q8N3U1 123 aa10.86□□□□□ -0.67
HMGA1-204ENST00000401473 ALKBH7Q9BT30 221 aaPredicted RBP10.86□□□□□ -0.67
HMGA1-204ENST00000401473 TMA7Q9Y2S6 64 aaKnown RBP10.86□□□□□ -0.67
HMGA1-204ENST00000401473 SIVA1O15304 175 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms