RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SIVA1O15304 175 aa5.52□□□□□ -1.53
UPF2-203ENST00000397053 PDE6GP18545 87 aa5.52□□□□□ -1.53
UPF2-203ENST00000397053 DEFB1P60022 68 aa5.52□□□□□ -1.53
UPF2-203ENST00000397053 SPINK6Q6UWN8 80 aa5.52□□□□□ -1.53
UPF2-203ENST00000397053 MAP6D1Q9H9H5 199 aa5.52□□□□□ -1.53
UPF2-203ENST00000397053 COL24A1Q17RW2 1714 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 PLXNB1O43157 2135 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 A0A0J9YX75 114 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 LYRM9A8MSI8 78 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 BPY2O14599 106 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 LINC00322Q6ZN03 302 aaPredicted RBP5.51□□□□□ -1.53
UPF2-203ENST00000397053 KIF13BQ9NQT8 1826 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 NFE4Q86UQ8 179 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 ARFGEF1Q9Y6D6 1849 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 IGKV2D-26A0A0A0MRZ7 120 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 TRAV10A0A0B4J240 114 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 LINC01548A6NM66 108 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 SPRNQ5BIV9 151 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 PCP2Q8IVA1 136 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 UPK3BQ9BT76 320 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 PRAC2D3DTV9 90 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 UBE2D3P61077 147 aa5.51□□□□□ -1.53
UPF2-203ENST00000397053 A6NDX4 124 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 FBXL19-AS1Q494R0 122 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 MAJINQ3KP22 176 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 Q6ZTI0 123 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 LOC105371267A0A1B0GV96 52 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 TEX22C9J3V5 150 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 TMEM256-PLSCR3K7ERE1 68 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 ANKRD39Q53RE8 183 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 Q8N7P7 452 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 SPANXCQ9NY87 97 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 A0A0B4J2C4 111 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 MDFICQ9P1T7 246 aa5.5□□□□□ -1.53
UPF2-203ENST00000397053 MED14OSP0DP75 135 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 UNQ9165/PRO28630Q6UXU0 137 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 LINC00482Q8N8I6 264 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 ACANP16112 2415 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 FAM19A5Q7Z5A7 132 aaPredicted RBP5.49□□□□□ -1.53
UPF2-203ENST00000397053 ODF3L1Q8IXM7 274 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 RITA1Q96K30 269 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 SIRPDQ9H106 197 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 IGLV1-47P01700 117 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 IGF1P05019 195 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 MIFP14174 115 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 C3orf22Q8N5N4 141 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 ATOX1O00244 68 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 TUBGCP6Q96RT7 1819 aa5.49□□□□□ -1.53
UPF2-203ENST00000397053 LOC285556D6RIA3 1793 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 FSHBP01225 129 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 SYCNQ0VAF6 134 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 CHCHD10Q8WYQ3 142 aaPredicted RBP5.48□□□□□ -1.53
UPF2-203ENST00000397053 MED12LQ86YW9 2145 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 IGHV1-58A0A0C4DH39 117 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 IGHV4-31P0DP07 118 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 ADCYAP1P18509 176 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 COL4A1P02462 1669 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 TRBV6-1A0A0K0K1D8 114 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 ODF1Q14990 250 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 C20orf203Q8NBC4 194 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 POLQO75417 2590 aa5.48□□□□□ -1.53
UPF2-203ENST00000397053 LY6G6DO95868 133 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 LMO4P61968 165 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 SMIM20Q8N5G0 67 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 NDUFC2O95298 119 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 XAGE1AQ9HD64 81 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 K7EN84 100 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 PATE2Q6UY27 113 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 ZFAND2AQ8N6M9 145 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 ZNF524Q96C55 264 aa5.47□□□□□ -1.53
UPF2-203ENST00000397053 LGALS9O00182 355 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 DEFB114Q30KQ6 69 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 Q6YL49 198 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 PPDPFQ9H3Y8 114 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 PRORYQ9H606 182 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 SS18L2Q9UHA2 77 aa5.46□□□□□ -1.53
UPF2-203ENST00000397053 USP9YO00507 2555 aaPredicted RBP5.46□□□□□ -1.54
UPF2-203ENST00000397053 Q6ZSV7 163 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 WI2-2373I1.2A0A1W2PRP0 233 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 LY6LH3BQJ8 138 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 C19orf84I3L1E1 186 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 Q6ZUT4 128 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 Q8NA96 180 aa5.46□□□□□ -1.54
UPF2-203ENST00000397053 ZNF706Q9Y5V0 76 aaPredicted RBP5.46□□□□□ -1.54
UPF2-203ENST00000397053 CEMP1Q6PRD7 247 aaPredicted RBP5.46□□□□□ -1.54
UPF2-203ENST00000397053 C11orf86A6NJI1 115 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 FAM236AA0A1B0GUQ0 79 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 FAM236BA0A1B0GV22 79 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 B5MCH6 92 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 IGLV3-1P01715 115 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 ZNF843Q8N446 348 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 SPTSSBQ8NFR3 76 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 TRPM7Q96QT4 1865 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 UBE2D2P62837 147 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 FOXI1Q12951 378 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 DSCAMO60469 2012 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 PSME4Q14997 1843 aa5.45□□□□□ -1.54
UPF2-203ENST00000397053 PDCD11Q14690 1871 aaKnown RBP5.45□□□□□ -1.54
UPF2-203ENST00000397053 TEX49A0A1B0GTD5 131 aa5.44□□□□□ -1.54
UPF2-203ENST00000397053 CRYGBP07316 175 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms