RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 KIR2DL4Q99706 377 aa13.66□□□□□ -0.22
PCDHA1-202ENST00000394633 ACANP16112 2415 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 SDHAF1A6NFY7 115 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 K7EMT4 169 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 TSPEAR-AS2P59090 65 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 TIMM17AQ99595 171 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 SPATA25Q9BR10 227 aa13.65□□□□□ -0.22
PCDHA1-202ENST00000394633 LGALS9O00182 355 aa13.64□□□□□ -0.23
PCDHA1-202ENST00000394633 SONP18583 2426 aaKnown RBP13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 TRBV27A0A0K0K1C4 114 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 SMCPP49901 116 aaPredicted RBP13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 SMAGPQ0VAQ4 97 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 ZNRF2Q8NHG8 242 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 DLX4Q92988 240 aaPredicted RBP13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 TRBV6-5A0A0K0K1A5 114 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 APOMO95445 188 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 TMEM95Q3KNT9 176 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 CFAP126Q5VTH2 177 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 SFTA2Q6UW10 78 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 C9orf85Q96MD7 179 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 MYO9AB2RTY4 2548 aa13.63□□□□□ -0.23
PCDHA1-202ENST00000394633 IGHV3-16A0A0C4DH30 117 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 ZNF876PQ49A33 203 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 TMEM170BQ5T4T1 132 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 FAM74A4Q5TZK3 123 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 WFDC11Q8NEX6 87 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 SCGB1A1P11684 91 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 LINC01356Q8N9X3 169 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 MDFICQ9P1T7 246 aa13.62□□□□□ -0.23
PCDHA1-202ENST00000394633 LOC107984156A0A0G2JMH3 177 aa13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 UBE2D3P61077 147 aa13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 UBE2D2P62837 147 aa13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 NDUFA11Q86Y39 141 aa13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 ARL17AQ8IVW1 177 aa13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 ZNF256Q9Y2P7 627 aaPredicted RBP13.61□□□□□ -0.23
PCDHA1-202ENST00000394633 TRAV12-2A0A075B6T6 113 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 TGFAP01135 160 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 IGHV3-30P01768 117 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 ZNF688P0C7X2 276 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 IGHV3-30-5P0DP03 117 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 PSMB2P49721 201 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 CUBNO60494 3623 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 IGKV3-20P01619 116 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 IGHV4-31P0DP07 118 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 AMELXQ99217 191 aa13.6□□□□□ -0.23
PCDHA1-202ENST00000394633 SLC25A29Q8N8R3 303 aa13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 ODF3Q96PU9 254 aa13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 M0QY20 66 aa13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 ZNF56Q15929 161 aa13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 OPRPNQ99935 248 aaPredicted RBP13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 C1QTNF4Q9BXJ3 329 aa13.59□□□□□ -0.23
PCDHA1-202ENST00000394633 A0A0J9YX75 114 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 FOXI1Q12951 378 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 Q8N1Y9 231 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 J3QQQ9 107 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 CFC1BP0CG36 223 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 CFC1P0CG37 223 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 PSMB8P28062 276 aa13.58□□□□□ -0.24
PCDHA1-202ENST00000394633 OTOGQ6ZRI0 2925 aa13.57□□□□□ -0.24
PCDHA1-202ENST00000394633 NSUN5P1Q3KNT7 163 aa13.57□□□□□ -0.24
PCDHA1-202ENST00000394633 C10orf99Q6UWK7 81 aa13.57□□□□□ -0.24
PCDHA1-202ENST00000394633 NFE4Q86UQ8 179 aa13.57□□□□□ -0.24
PCDHA1-202ENST00000394633 ATP6V0E2Q8NHE4 81 aa13.57□□□□□ -0.24
PCDHA1-202ENST00000394633 SYT8Q8NBV8 401 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 P0DMU3 169 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 FAM231AP0DMU4 169 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 FAM231CP0DMU5 169 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 GATA3P23771 443 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 RHOHQ15669 191 aa13.56□□□□□ -0.24
PCDHA1-202ENST00000394633 ZNF418Q8TF45 676 aaPredicted RBP13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 IGHV1OR15-1A0A075B7D0 117 aa13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 K7EQG2 157 aa13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 LGALS3P17931 250 aaKnown RBP13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 SPINK13Q1W4C9 94 aa13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 TRPT1Q86TN4 253 aaKnown RBP13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 ZNF580Q9UK33 172 aa13.55□□□□□ -0.24
PCDHA1-202ENST00000394633 TCL1BO95988 128 aa13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 LYRM7Q5U5X0 104 aa13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 TMEM223A0PJW6 202 aa13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 SNRPD3P62318 126 aaKnown RBP13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 C10orf126Q8N4M7 172 aa13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 PTH2Q96A98 100 aa13.54□□□□□ -0.24
PCDHA1-202ENST00000394633 FLNBO75369 2602 aaKnown RBP13.53□□□□□ -0.24
PCDHA1-202ENST00000394633 LEPROTO15243 131 aa13.52□□□□□ -0.24
PCDHA1-202ENST00000394633 C20orf203Q8NBC4 194 aa13.52□□□□□ -0.24
PCDHA1-202ENST00000394633 IGHV4-59P01825 116 aa13.52□□□□□ -0.25
PCDHA1-202ENST00000394633 ZNF22P17026 224 aaPredicted RBP13.51□□□□□ -0.25
PCDHA1-202ENST00000394633 PRO1854Q9UHT4 67 aa13.51□□□□□ -0.25
PCDHA1-202ENST00000394633 ANK3Q12955 4377 aaKnown RBP13.51□□□□□ -0.25
PCDHA1-202ENST00000394633 MTORP42345 2549 aa13.51□□□□□ -0.25
PCDHA1-202ENST00000394633 I3L3M4 83 aa13.5□□□□□ -0.25
PCDHA1-202ENST00000394633 EIF4EBP3O60516 100 aaPredicted RBP13.5□□□□□ -0.25
PCDHA1-202ENST00000394633 CARD19Q96LW7 228 aa13.5□□□□□ -0.25
PCDHA1-202ENST00000394633 CDIP1Q9H305 208 aa13.5□□□□□ -0.25
PCDHA1-202ENST00000394633 TRBV20-1A0A075B6N2 111 aa13.49□□□□□ -0.25
PCDHA1-202ENST00000394633 J3QLI3 93 aa13.49□□□□□ -0.25
PCDHA1-202ENST00000394633 RHODO00212 210 aa13.49□□□□□ -0.25
PCDHA1-202ENST00000394633 DEFB112Q30KQ8 113 aa13.49□□□□□ -0.25
PCDHA1-202ENST00000394633 SBSPONQ8IVN8 264 aa13.49□□□□□ -0.25
PCDHA1-202ENST00000394633 IGLV4-3A0A075B6K6 122 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms