RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SVIPQ8NHG7 77 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 ZMAT4Q9H898 229 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 XCL2Q9UBD3 114 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 M0R2P5 195 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 SLC25A20O43772 301 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 ZNF462Q96JM2 2506 aa12.14□□□□□ -0.47
PCDH1-203ENST00000394536 TRBV20-1A0A075B6N2 111 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 TRAV13-1A0A0B4J241 112 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 P0DMU3 169 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 FAM231AP0DMU4 169 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 FAM231CP0DMU5 169 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 ATP6V0BQ99437 205 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 TSPAN13O95857 204 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 FOXI1Q12951 378 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 MUSTN1Q8IVN3 82 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.13□□□□□ -0.47
PCDH1-203ENST00000394536 NDUFA12Q9UI09 145 aa12.13□□□□□ -0.47
PCDH1-203ENST00000394536 C2orf82Q6UX34 121 aa12.12□□□□□ -0.47
PCDH1-203ENST00000394536 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.12□□□□□ -0.47
PCDH1-203ENST00000394536 IGKV2-29A2NJV5 120 aaPredicted RBP12.12□□□□□ -0.47
PCDH1-203ENST00000394536 C19orf54Q5BKX5 351 aa12.12□□□□□ -0.47
PCDH1-203ENST00000394536 ASH1LQ9NR48 2969 aaKnown RBP12.12□□□□□ -0.47
PCDH1-203ENST00000394536 COL27A1Q8IZC6 1860 aaPredicted RBP12.12□□□□□ -0.47
PCDH1-203ENST00000394536 RNF223E7ERA6 249 aa12.12□□□□□ -0.47
PCDH1-203ENST00000394536 COX6B1P14854 86 aa12.12□□□□□ -0.47
PCDH1-203ENST00000394536 C10orf126Q8N4M7 172 aa12.12□□□□□ -0.47
PCDH1-203ENST00000394536 NTN5Q8WTR8 489 aaPredicted RBP12.12□□□□□ -0.47
PCDH1-203ENST00000394536 TRGV1A0A0A0MS02 117 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 PRM2P04554 102 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 CFC1BP0CG36 223 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 CFC1P0CG37 223 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 C1QTNF4Q9BXJ3 329 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 TRAV8-3A0A0A6YYJ7 113 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 TMEM262E9PQX1 116 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 GAGE2BQ13066 116 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 GAGE2EQ4V326 116 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 NDUFA11Q86Y39 141 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 GAGE2DQ9UEU5 116 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 EPG5Q9HCE0 2579 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 UBE2L6O14933 153 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 HOXD3P31249 432 aaPredicted RBP12.11□□□□□ -0.47
PCDH1-203ENST00000394536 PIFOQ8TCI5 191 aa12.11□□□□□ -0.47
PCDH1-203ENST00000394536 SMG1Q96Q15 3661 aaKnown RBP12.1□□□□□ -0.47
PCDH1-203ENST00000394536 TRBV7-3A0A075B6L6 115 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 ZFAND6Q6FIF0 208 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 U3KQE9 123 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 ANKRD17O75179 2603 aaKnown RBP12.1□□□□□ -0.47
PCDH1-203ENST00000394536 A0A0J9YY99 117 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 TCL1BO95988 128 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 HIST2H2BDQ6DRA6 164 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 DAND5Q8N907 189 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 C10orf105Q8TEF2 133 aa12.1□□□□□ -0.47
PCDH1-203ENST00000394536 ATXN8Q156A1 80 aa12.09□□□□□ -0.47
PCDH1-203ENST00000394536 COL12A1Q99715 3063 aa12.09□□□□□ -0.47
PCDH1-203ENST00000394536 IGHV4-4A0A075B6R2 117 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 DOPEY1Q5JWR5 2465 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 TRAV8-4A0A0B4J246 113 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 H3BUA1 57 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 APRG1Q8IVJ8 170 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 STHQ8IWL8 128 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 RELNP78509 3460 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 SLURP1P55000 103 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 PSMG3-AS1Q96PY0 264 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 TIMM17AQ99595 171 aa12.08□□□□□ -0.48
PCDH1-203ENST00000394536 TRGV2A0A075B6R0 118 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 A6NDX4 124 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 ZNF415Q09FC8 603 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 TEN1Q86WV5 123 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 IGHV4OR15-8A0A075B7B6 117 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 A0A087WW49 117 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 PROK1P58294 105 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 ANKRD29Q8N6D5 301 aa12.07□□□□□ -0.48
PCDH1-203ENST00000394536 A0A0J9YX75 114 aa12.06□□□□□ -0.48
PCDH1-203ENST00000394536 PEMTQ9UBM1 199 aa12.06□□□□□ -0.48
PCDH1-203ENST00000394536 ZNRF2Q8NHG8 242 aa12.06□□□□□ -0.48
PCDH1-203ENST00000394536 C20orf203Q8NBC4 194 aa12.06□□□□□ -0.48
PCDH1-203ENST00000394536 MED14OSP0DP75 135 aa12.05□□□□□ -0.48
PCDH1-203ENST00000394536 LINC01356Q8N9X3 169 aa12.05□□□□□ -0.48
PCDH1-203ENST00000394536 CFHR3Q02985 330 aa12.05□□□□□ -0.48
PCDH1-203ENST00000394536 RHOHQ15669 191 aa12.05□□□□□ -0.48
PCDH1-203ENST00000394536 LEPROTO15243 131 aa12.05□□□□□ -0.48
PCDH1-203ENST00000394536 MT-ATP8P03928 68 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 MORN3Q6PF18 240 aaPredicted RBP12.04□□□□□ -0.48
PCDH1-203ENST00000394536 GPHB5Q86YW7 130 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 OR13C6PQ8NH95 151 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 PRIMA1Q86XR5 153 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 RHODO00212 210 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 POLR2KP53803 58 aaKnown RBP12.04□□□□□ -0.48
PCDH1-203ENST00000394536 SLC25A29Q8N8R3 303 aa12.04□□□□□ -0.48
PCDH1-203ENST00000394536 A8MZ25 164 aa12.03□□□□□ -0.48
PCDH1-203ENST00000394536 K7EMT4 169 aa12.02□□□□□ -0.48
PCDH1-203ENST00000394536 M0QY20 66 aa12.02□□□□□ -0.48
PCDH1-203ENST00000394536 AVPP01185 164 aa12.02□□□□□ -0.48
PCDH1-203ENST00000394536 IGHV3-30-3P0DP02 117 aa12.02□□□□□ -0.48
PCDH1-203ENST00000394536 GAGE12JA6NER3 117 aa12.02□□□□□ -0.49
PCDH1-203ENST00000394536 GAGE4Q13068 117 aa12.02□□□□□ -0.49
PCDH1-203ENST00000394536 GAGE5Q13069 117 aa12.02□□□□□ -0.49
PCDH1-203ENST00000394536 YAE1D1Q9NRH1 226 aa12.02□□□□□ -0.49
PCDH1-203ENST00000394536 TSPEAR-AS2P59090 65 aa12.01□□□□□ -0.49
PCDH1-203ENST00000394536 IGIPA6NJ69 53 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms