RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 G3V4G9 280 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 ATP6V0E2Q8NHE4 81 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 A0A1B0GXF2 115 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 C9orf66Q5T8R8 295 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 RPL39LQ96EH5 51 aaKnown RBP11.53□□□□□ -0.56
NPHP4-201ENST00000378156 A0A096LPF7 62 aa11.52□□□□□ -0.56
NPHP4-201ENST00000378156 A4D1N5 150 aa11.52□□□□□ -0.57
NPHP4-201ENST00000378156 DEFB1P60022 68 aa11.52□□□□□ -0.57
NPHP4-201ENST00000378156 RNF152Q8N8N0 203 aa11.52□□□□□ -0.57
NPHP4-201ENST00000378156 TLN2Q9Y4G6 2542 aa11.52□□□□□ -0.57
NPHP4-201ENST00000378156 TANC2Q9HCD6 1990 aa11.52□□□□□ -0.57
NPHP4-201ENST00000378156 TTTY13Q9BZ97 58 aa11.51□□□□□ -0.57
NPHP4-201ENST00000378156 C9orf47Q6ZRZ4 202 aa11.51□□□□□ -0.57
NPHP4-201ENST00000378156 MLST8Q9BVC4 326 aa11.51□□□□□ -0.57
NPHP4-201ENST00000378156 TP53TG3Q9ULZ0 132 aa11.51□□□□□ -0.57
NPHP4-201ENST00000378156 UNQ9165/PRO28630Q6UXU0 137 aa11.5□□□□□ -0.57
NPHP4-201ENST00000378156 ICOSQ9Y6W8 199 aa11.5□□□□□ -0.57
NPHP4-201ENST00000378156 NDUFC2O95298 119 aa11.5□□□□□ -0.57
NPHP4-201ENST00000378156 MBD6Q96DN6 1003 aa11.5□□□□□ -0.57
NPHP4-201ENST00000378156 USP9XQ93008 2570 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-201ENST00000378156 ANGP03950 147 aaKnown RBP11.49□□□□□ -0.57
NPHP4-201ENST00000378156 RNASE13Q5GAN3 156 aaKnown RBP11.49□□□□□ -0.57
NPHP4-201ENST00000378156 MUSTN1Q8IVN3 82 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 ATG2AQ2TAZ0 1938 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 H3BT86 120 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 TRBV12-3P01733 135 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 FAM236AA0A1B0GUQ0 79 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 FAM236BA0A1B0GV22 79 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 LINC01548A6NM66 108 aa11.49□□□□□ -0.57
NPHP4-201ENST00000378156 A0A1B0GX51 115 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 CTRLP40313 264 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 TRBV6-1A0A0K0K1D8 114 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 C1orf43Q9BWL3 253 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 TNRC6AQ8NDV7 1962 aaKnown RBP11.48□□□□□ -0.57
NPHP4-201ENST00000378156 JMJD1CQ15652 2540 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 E9PLD3 99 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 RS1O15537 224 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 PIFOQ8TCI5 191 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 SPTBN4Q9H254 2564 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 A0A0J9YY99 117 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 H3BQ85 93 aa11.48□□□□□ -0.57
NPHP4-201ENST00000378156 ZNF80P51504 273 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-201ENST00000378156 ZFP2Q6ZN57 461 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 ZFYVE26Q68DK2 2539 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 TRBV10-2A0A0K0K1G8 114 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 LRRC75A-AS1Q8N1F1 130 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 MYCNOSP40205 109 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 SPATA12Q7Z6I5 190 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 Q8N1Y9 231 aa11.47□□□□□ -0.57
NPHP4-201ENST00000378156 CLPSL1A2RUU4 121 aa11.46□□□□□ -0.57
NPHP4-201ENST00000378156 TMEM61Q8N0U2 210 aa11.46□□□□□ -0.57
NPHP4-201ENST00000378156 hADV29S1A0JD25 119 aa11.46□□□□□ -0.58
NPHP4-201ENST00000378156 CRYGBP07316 175 aa11.46□□□□□ -0.58
NPHP4-201ENST00000378156 CCDC140Q96MF4 163 aa11.46□□□□□ -0.58
NPHP4-201ENST00000378156 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-201ENST00000378156 IGKV2-29A2NJV5 120 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-201ENST00000378156 ATP5G1P05496 136 aa11.46□□□□□ -0.58
NPHP4-201ENST00000378156 USP9YO00507 2555 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-201ENST00000378156 A0A0J9YXV3 536 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 C11orf71Q6IPW1 123 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 C16orf74Q96GX8 76 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 C4orf3Q8WVX3 66 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 TIMM17AQ99595 171 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 CPAMD8Q8IZJ3 1885 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 ZMAT4Q9H898 229 aa11.45□□□□□ -0.58
NPHP4-201ENST00000378156 CHD8Q9HCK8 2581 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 TRAV26-1A0A087WT03 109 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 SND1-IT1Q9HBX3 110 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 IGF1P05019 195 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 TP73-AS1Q9UF72 201 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 PSMB8P28062 276 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 CLPSL2Q6UWE3 100 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 RMI2Q96E14 147 aa11.44□□□□□ -0.58
NPHP4-201ENST00000378156 DNAJC9-AS1A6NH13 148 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 JMJD7-PLA2G4BH0Y9G9 81 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 FUSP35637 526 aaKnown RBP eCLIP11.43□□□□□ -0.58
NPHP4-201ENST00000378156 EBI3Q14213 229 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 TOMM6Q96B49 74 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 ODF1Q14990 250 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 ABCA12Q86UK0 2595 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 MED14OSP0DP75 135 aa11.43□□□□□ -0.58
NPHP4-201ENST00000378156 OPRPNQ99935 248 aaPredicted RBP11.43□□□□□ -0.58
NPHP4-201ENST00000378156 LY6LH3BQJ8 138 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 A0A0J9YX75 114 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 C11orf86A6NJI1 115 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 WFDC11Q8NEX6 87 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 ARHGAP32A7KAX9 2087 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 TRAV4A0A0B4J268 109 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 SPART-AS1P0CW21 52 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 IGHV4-31P0DP07 118 aa11.42□□□□□ -0.58
NPHP4-201ENST00000378156 XCL1P47992 114 aa11.41□□□□□ -0.58
NPHP4-201ENST00000378156 PRRC2AP48634 2157 aaKnown RBP11.41□□□□□ -0.58
NPHP4-201ENST00000378156 IGKV3D-7A0A0C4DH55 119 aa11.4□□□□□ -0.58
NPHP4-201ENST00000378156 GYPEP15421 78 aa11.4□□□□□ -0.58
NPHP4-201ENST00000378156 ZNF843Q8N446 348 aa11.4□□□□□ -0.58
NPHP4-201ENST00000378156 BAALCQ8WXS3 180 aa11.4□□□□□ -0.58
NPHP4-201ENST00000378156 CRIP1P50238 77 aa11.4□□□□□ -0.58
NPHP4-201ENST00000378156 RPL39P62891 51 aaKnown RBP11.4□□□□□ -0.58
NPHP4-201ENST00000378156 SETD2Q9BYW2 2564 aaPredicted RBP11.4□□□□□ -0.58
NPHP4-201ENST00000378156 LGALS9O00182 355 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 201.5 ms