RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 WI2-2373I1.2A0A1W2PRP0 233 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 FOXI1Q12951 378 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 ZNF747Q9BV97 191 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 HRCT1Q6UXD1 115 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 MLST8Q9BVC4 326 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 PLXNA2O75051 1894 aa7.85□□□□□ -1.15
CLIP1-202ENST00000358808 KIF26AQ9ULI4 1882 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-202ENST00000358808 DEFB131BA0A096LNP1 70 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 M0R2N4 97 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-202ENST00000358808 TMEM263Q8WUH6 116 aaKnown RBP7.83□□□□□ -1.16
CLIP1-202ENST00000358808 K7EN84 100 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 C5orf56Q8N8D9 126 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 HEATR5AQ86XA9 2040 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 LINC00269Q8N2A0 174 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 PDE6GP18545 87 aa7.83□□□□□ -1.16
CLIP1-202ENST00000358808 MRPL55Q7Z7F7 128 aaKnown RBP7.83□□□□□ -1.16
CLIP1-202ENST00000358808 DNAJC9-AS1A6NH13 148 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 ADORA2A-AS1P86434 159 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 REG3AQ06141 175 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 UFSP1Q6NVU6 142 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 LY6G6CO95867 125 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 MALRD1Q5VYJ5 2156 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 NDUFA11Q86Y39 141 aa7.82□□□□□ -1.16
CLIP1-202ENST00000358808 TRAV23DV6A0A075B6W5 121 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 ZNF524Q96C55 264 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 IGLV2-18A0A075B6J9 118 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 IGFL2Q6UWQ7 119 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 SIRPDQ9H106 197 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 MED14OSP0DP75 135 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 GTF3C1Q12789 2109 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 SCXQ7RTU7 201 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 C9orf85Q96MD7 179 aa7.81□□□□□ -1.16
CLIP1-202ENST00000358808 MSRB1Q9NZV6 116 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 UBE2D2P62837 147 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 RITA1Q96K30 269 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 I3L2K1 104 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 RETNQ9HD89 108 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 IGLV11-55A0A075B6I3 123 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 PPDPFQ9H3Y8 114 aa7.8□□□□□ -1.16
CLIP1-202ENST00000358808 TNCP24821 2201 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 NFE4Q86UQ8 179 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 ZNF706Q9Y5V0 76 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-202ENST00000358808 IGHV4-30-4P0DP06 118 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 IGHV4-31P0DP07 118 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 TOMM6Q96B49 74 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 K7EMT4 169 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 ODF3L1Q8IXM7 274 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 MAP6D1Q9H9H5 199 aa7.79□□□□□ -1.16
CLIP1-202ENST00000358808 DAZAP2Q15038 168 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-202ENST00000358808 TEN1Q86WV5 123 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 TRBV6-1A0A0K0K1D8 114 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 SPRNQ5BIV9 151 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 PTPRQQ9UMZ3 2332 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 CHCHD10Q8WYQ3 142 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-202ENST00000358808 IGHV1-58A0A0C4DH39 117 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 FAM222AQ5U5X8 452 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 CHD3Q12873 2000 aaKnown RBP7.78□□□□□ -1.16
CLIP1-202ENST00000358808 PRAC2D3DTV9 90 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 K7EIM0 57 aa7.78□□□□□ -1.16
CLIP1-202ENST00000358808 RSPO1Q2MKA7 263 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-202ENST00000358808 C11orf86A6NJI1 115 aa7.77□□□□□ -1.16
CLIP1-202ENST00000358808 DEFB1P60022 68 aa7.77□□□□□ -1.16
CLIP1-202ENST00000358808 ZFAND2AQ8N6M9 145 aa7.77□□□□□ -1.16
CLIP1-202ENST00000358808 ZGRF1Q86YA3 2104 aa7.77□□□□□ -1.16
CLIP1-202ENST00000358808 INAFM1C9JVW0 142 aa7.77□□□□□ -1.17
CLIP1-202ENST00000358808 LYPD6Q86Y78 171 aa7.77□□□□□ -1.17
CLIP1-202ENST00000358808 BDP1A6H8Y1 2624 aa7.77□□□□□ -1.17
CLIP1-202ENST00000358808 MDFICQ9P1T7 246 aa7.77□□□□□ -1.17
CLIP1-202ENST00000358808 TMEM89A2RUT3 159 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 HIST2H2BDQ6DRA6 164 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 CEMP1Q6PRD7 247 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-202ENST00000358808 Q6ZUT4 128 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 NOTCH4Q99466 2003 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 SPG11Q96JI7 2443 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 TDRG1Q3Y452 100 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 SHISA2Q6UWI4 295 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 PRORYQ9H606 182 aa7.76□□□□□ -1.17
CLIP1-202ENST00000358808 LYRM9A8MSI8 78 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 NUPR1O60356 82 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 FAM208BQ5VWN6 2430 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 IGLV9-49A0A0B4J1Y8 123 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 TRBV10-1A0A0K0K1A3 114 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 ALPK3Q96L96 1907 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 MED13Q9UHV7 2174 aa7.75□□□□□ -1.17
CLIP1-202ENST00000358808 LINC00322Q6ZN03 302 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-202ENST00000358808 C1orf158Q8N1D5 194 aa7.74□□□□□ -1.17
CLIP1-202ENST00000358808 Q6ZTI0 123 aa7.74□□□□□ -1.17
CLIP1-202ENST00000358808 Q6ZVQ6 151 aa7.74□□□□□ -1.17
CLIP1-202ENST00000358808 NACAE9PAV3 2078 aa7.74□□□□□ -1.17
CLIP1-202ENST00000358808 LINC00173Q6ZV60 143 aa7.74□□□□□ -1.17
CLIP1-202ENST00000358808 FAM240AA0A1B0GVK7 77 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 E9PLD3 99 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 H3BT86 120 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 P0DMU3 169 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 FAM231AP0DMU4 169 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 FAM231CP0DMU5 169 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 Q8N9L7 120 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 PLXND1Q9Y4D7 1925 aa7.73□□□□□ -1.17
CLIP1-202ENST00000358808 TRAV10A0A0B4J240 114 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms