RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CCDC140Q96MF4 163 aa7.64□□□□□ -1.19
SYNE1-203ENST00000354674 DUX5Q96PT3 197 aa7.64□□□□□ -1.19
SYNE1-203ENST00000354674 MRPS12O15235 138 aaKnown RBP7.63□□□□□ -1.19
SYNE1-203ENST00000354674 ZNF22P17026 224 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-203ENST00000354674 PMVKQ15126 192 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 KIR2DL5BQ8NHK3 375 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 GFRA4Q9GZZ7 299 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 ACANP16112 2415 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 IGHV3OR16-8A0A075B7F1 116 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 ORM1P02763 201 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 TRGV3P03979 118 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 RNF152Q8N8N0 203 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 EEF1AKMT3Q96AZ1 226 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 IGHV3-64A0A075B6Q5 118 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 TNFRSF6BO95407 300 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 MYCNOSP40205 109 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 TMEM101Q96IK0 257 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 PRADC1Q9BSG0 188 aa7.63□□□□□ -1.19
SYNE1-203ENST00000354674 IGLV2-11P01706 119 aa7.62□□□□□ -1.19
SYNE1-203ENST00000354674 CT83Q5H943 113 aa7.62□□□□□ -1.19
SYNE1-203ENST00000354674 Q6ZSV7 163 aa7.62□□□□□ -1.19
SYNE1-203ENST00000354674 INAFM1C9JVW0 142 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 IGHV3-23P01764 117 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 ZNF491Q8N8L2 437 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 IGKV2-40A0A087WW87 121 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-203ENST00000354674 IGKV2D-40P01614 121 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-203ENST00000354674 NDUFA11Q86Y39 141 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 DNAJC30Q96LL9 226 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 C16orf95Q9H693 158 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 HIVEP1P15822 2718 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 TLN2Q9Y4G6 2542 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 PKIGQ9Y2B9 76 aa7.61□□□□□ -1.19
SYNE1-203ENST00000354674 CYSRT1A8MQ03 144 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 HERVK_113P61574 105 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 NPC2P61916 151 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 C10orf99Q6UWK7 81 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 BAHCC1Q9P281 2608 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 NOTCH2Q04721 2471 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 CFC1BP0CG36 223 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 CFC1P0CG37 223 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 CLEC19AQ6UXS0 136 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 DSCR8Q96T75 97 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 ZMAT4Q9H898 229 aa7.6□□□□□ -1.19
SYNE1-203ENST00000354674 SH2D1AO60880 128 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 UBE2D3P61077 147 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 UBE2D2P62837 147 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 ERCC8Q13216 396 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 RNF125Q96EQ8 232 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 TMEM126AQ9H061 195 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 ZFAND3Q9H8U3 227 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 NDUFA7O95182 113 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 CYSTM1Q9H1C7 97 aa7.59□□□□□ -1.19
SYNE1-203ENST00000354674 hADV29S1A0JD25 119 aa7.59□□□□□ -1.2
SYNE1-203ENST00000354674 IGHV3-35A0A0C4DH35 117 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 DUSP14O95147 198 aaKnown RBP7.58□□□□□ -1.2
SYNE1-203ENST00000354674 GP9P14770 177 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 LINC00477Q96M19 166 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 MDFICQ9P1T7 246 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 SONP18583 2426 aaKnown RBP7.58□□□□□ -1.2
SYNE1-203ENST00000354674 H3BRN7 92 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 TAL2Q16559 108 aa7.58□□□□□ -1.2
SYNE1-203ENST00000354674 SLC25A39Q9BZJ4 359 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-203ENST00000354674 TRAV12-3A0A0B4J271 114 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 H7C1H1 209 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 J3KT08 172 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 C14orf178Q8N769 122 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-203ENST00000354674 SHANK2-AS3Q9BTD1 123 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 ATP5LO75964 103 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 TRBV12-3P01733 135 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 HLA-DMBP28068 263 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 ASIPP42127 132 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 ZNF80P51504 273 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-203ENST00000354674 UBE2E2Q96LR5 201 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 C1orf43Q9BWL3 253 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 CLPSL1A2RUU4 121 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 EDN2P20800 178 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 TMEM14CQ9P0S9 112 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 HIVEP2P31629 2446 aa7.57□□□□□ -1.2
SYNE1-203ENST00000354674 FLNBO75369 2602 aaKnown RBP7.56□□□□□ -1.2
SYNE1-203ENST00000354674 UBE2D1P51668 147 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 C2orf82Q6UX34 121 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 SCGB3A1Q96QR1 104 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 NXT2Q9NPJ8 142 aaKnown RBP7.56□□□□□ -1.2
SYNE1-203ENST00000354674 ZNF256Q9Y2P7 627 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-203ENST00000354674 NACAE9PAV3 2078 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 ADARB2-AS1A8MUL3 147 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 NDUFA4O00483 81 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 IGHV3-11P01762 117 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 TMEM170BQ5T4T1 132 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 GAGE2AQ6NT46 116 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 LINC01006Q8NI28 216 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 PRO1854Q9UHT4 67 aa7.56□□□□□ -1.2
SYNE1-203ENST00000354674 NSD1Q96L73 2696 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-203ENST00000354674 H3BMM0 161 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 UBE2WQ96B02 151 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 RNF185Q96GF1 192 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 U3KQE9 123 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 LYRM7Q5U5X0 104 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 OR13C6PQ8NH95 151 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 CLEC2BQ92478 149 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms