RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 HIVEP2P31629 2446 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 C20orf203Q8NBC4 194 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 LOC107984640A0A0U1RRK4 108 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 HRCT1Q6UXD1 115 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 A0A0J9YXV3 536 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 B3GALT5-AS1P59052 145 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 UBE2DNLQ8IWF7 75 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 SPRR3Q9UBC9 169 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 A0A0J9YY99 117 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 IGHV3-30P01768 117 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 ANGP03950 147 aaKnown RBP9.78□□□□□ -0.84
COL6A3-203ENST00000353578 IGHV3-30-5P0DP03 117 aa9.78□□□□□ -0.84
COL6A3-203ENST00000353578 RPL39LQ96EH5 51 aaKnown RBP9.78□□□□□ -0.84
COL6A3-203ENST00000353578 NPBQ8NG41 125 aa9.77□□□□□ -0.84
COL6A3-203ENST00000353578 PRR19A6NJB7 356 aa9.77□□□□□ -0.84
COL6A3-203ENST00000353578 ATP6V0E1O15342 81 aa9.77□□□□□ -0.85
COL6A3-203ENST00000353578 SAA4P35542 130 aa9.77□□□□□ -0.85
COL6A3-203ENST00000353578 C5orf38Q86SI9 138 aa9.77□□□□□ -0.85
COL6A3-203ENST00000353578 KIR2DL5BQ8NHK3 375 aa9.77□□□□□ -0.85
COL6A3-203ENST00000353578 C17orf82Q86X59 251 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-203ENST00000353578 CXCL6P80162 114 aa9.76□□□□□ -0.85
COL6A3-203ENST00000353578 BCE1O60756 84 aa9.76□□□□□ -0.85
COL6A3-203ENST00000353578 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-203ENST00000353578 TRBV7-7A0A0K0K1E9 115 aa9.76□□□□□ -0.85
COL6A3-203ENST00000353578 XCL1P47992 114 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 RSPO4Q2I0M5 234 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-203ENST00000353578 KRTAP27-1Q3LI81 207 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 PLA2G2EQ9NZK7 142 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 KLK9Q9UKQ9 250 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 MBD6Q96DN6 1003 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 J3QLI3 93 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 DEFB131AP59861 70 aa9.75□□□□□ -0.85
COL6A3-203ENST00000353578 H3BUX3 64 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 DEFB130BP0DP73 79 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 DEFB130AP0DP74 79 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 F8P00451 2351 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 TIRAPP58753 221 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 LIMD2Q9BT23 127 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 IGHV3-53P01767 116 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 UBE2D2P62837 147 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 COX17Q14061 63 aa9.74□□□□□ -0.85
COL6A3-203ENST00000353578 PYGO1Q9Y3Y4 419 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 LYPD6Q86Y78 171 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 LINC01560Q8TB33 94 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 MRPS12O15235 138 aaKnown RBP9.73□□□□□ -0.85
COL6A3-203ENST00000353578 UBE2D3P61077 147 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 MLANAQ16655 118 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 ZNF581Q9P0T4 197 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 TMEM223A0PJW6 202 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 P0C879 139 aa9.73□□□□□ -0.85
COL6A3-203ENST00000353578 RNF144BQ7Z419 303 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 I3L2K1 104 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 IGKV1-17P01599 117 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 ASPHD1Q5U4P2 390 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 MIR7-3HGQ8N6C7 128 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-203ENST00000353578 IGKV2-29A2NJV5 120 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-203ENST00000353578 WDR87Q6ZQQ6 2873 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 Q6ZR03 302 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 MDS2Q8NDY4 140 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 LINC00308Q8TCZ7 52 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 TRBV10-3A0A0K0K1G6 114 aa9.72□□□□□ -0.85
COL6A3-203ENST00000353578 IGLV3-9A0A075B6K5 115 aa9.71□□□□□ -0.85
COL6A3-203ENST00000353578 PRB3Q04118 309 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-203ENST00000353578 IGFL4Q6B9Z1 124 aa9.71□□□□□ -0.85
COL6A3-203ENST00000353578 CRYGAP11844 174 aa9.71□□□□□ -0.85
COL6A3-203ENST00000353578 LOXL1Q08397 574 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-203ENST00000353578 IGKV4-1P06312 121 aa9.71□□□□□ -0.86
COL6A3-203ENST00000353578 IGLV11-55A0A075B6I3 123 aa9.71□□□□□ -0.86
COL6A3-203ENST00000353578 CAMK2N2Q96S95 79 aa9.71□□□□□ -0.86
COL6A3-203ENST00000353578 TLN2Q9Y4G6 2542 aa9.71□□□□□ -0.86
COL6A3-203ENST00000353578 NFE4Q86UQ8 179 aa9.71□□□□□ -0.86
COL6A3-203ENST00000353578 TMEM89A2RUT3 159 aa9.7□□□□□ -0.86
COL6A3-203ENST00000353578 IGLV1-44P01699 117 aa9.7□□□□□ -0.86
COL6A3-203ENST00000353578 K7EMT4 169 aa9.7□□□□□ -0.86
COL6A3-203ENST00000353578 CNFNQ9BYD5 112 aa9.7□□□□□ -0.86
COL6A3-203ENST00000353578 LINC01356Q8N9X3 169 aa9.7□□□□□ -0.86
COL6A3-203ENST00000353578 IGHV3OR16-10A0A075B7F0 116 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 IGKV2D-26A0A0A0MRZ7 120 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 COL8A2P25067 703 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 CFHR3Q02985 330 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 K7EIM0 57 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 TRBV27A0A0K0K1C4 114 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 UBE2D4Q9Y2X8 147 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 BDP1A6H8Y1 2624 aa9.69□□□□□ -0.86
COL6A3-203ENST00000353578 LHBP01229 141 aa9.68□□□□□ -0.86
COL6A3-203ENST00000353578 RPL39P62891 51 aaKnown RBP9.68□□□□□ -0.86
COL6A3-203ENST00000353578 COL4A1P02462 1669 aa9.68□□□□□ -0.86
COL6A3-203ENST00000353578 LOXP28300 417 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-203ENST00000353578 ESM1Q9NQ30 184 aa9.68□□□□□ -0.86
COL6A3-203ENST00000353578 XCL2Q9UBD3 114 aa9.68□□□□□ -0.86
COL6A3-203ENST00000353578 CCL24O00175 119 aa9.67□□□□□ -0.86
COL6A3-203ENST00000353578 Q8N9L7 120 aa9.67□□□□□ -0.86
COL6A3-203ENST00000353578 IGHV3-16A0A0C4DH30 117 aa9.67□□□□□ -0.86
COL6A3-203ENST00000353578 GATA1P15976 413 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-203ENST00000353578 RPL35AP18077 110 aaKnown RBP9.67□□□□□ -0.86
COL6A3-203ENST00000353578 DHRS4-AS1Q9P1J3 65 aa9.67□□□□□ -0.86
COL6A3-203ENST00000353578 PRYO14603 147 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 RNASE13Q5GAN3 156 aaKnown RBP9.66□□□□□ -0.86
COL6A3-203ENST00000353578 WDR86Q86TI4 376 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms