RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 LINC00158P58513 81 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 NPBQ8NG41 125 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 RNF223E7ERA6 249 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 K7EMT4 169 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 C11orf45Q8TAV5 145 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 SHROOM3Q8TF72 1996 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 ZNF503-AS2A6NEH8 195 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 LY6G6DO95868 133 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 C9orf66Q5T8R8 295 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 IGFL4Q6B9Z1 124 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 NTM-AS1Q6ZSK4 140 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 WFDC9Q8NEX5 89 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 ITLN2Q8WWU7 325 aaPredicted RBP2.99□□□□□ -1.93
NEDD4-201ENST00000338963 KIAA0087Q14695 138 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 UNQ9165/PRO28630Q6UXU0 137 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 FAM218AQ96MZ4 157 aa2.99□□□□□ -1.93
NEDD4-201ENST00000338963 A0A087WYN8 130 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 A6NED7 52 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 IGHV1-8P0DP01 117 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 IGKV2-29A2NJV5 120 aaPredicted RBP2.98□□□□□ -1.93
NEDD4-201ENST00000338963 A8MUN3 132 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 C5orf67F2Z3F1 127 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 LINC00315P59091 139 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 Q75L30 129 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 TRAV10A0A0B4J240 114 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 PLXNB2O15031 1838 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 PRAC2D3DTV9 90 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 SPRY3O43610 288 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 SPINK2P20155 84 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 LINC01554Q52M75 96 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 Q8N814 137 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 DEFB108BQ8NET1 73 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 COX7B2Q8TF08 81 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 SMIM11BQ8TCY0 68 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 PRR15LQ9BU68 103 aa2.98□□□□□ -1.93
NEDD4-201ENST00000338963 Q6ZQT0 140 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 TTTY12Q9BZ98 90 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 C22orf24Q9Y442 160 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 SCN2AQ99250 2005 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 PSPHP1O15172 72 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 KLK9Q2XQG4 91 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 KAAG1Q9UBP8 84 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 KLK9Q9UKQ9 250 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 KIF26AQ9ULI4 1882 aaPredicted RBP2.97□□□□□ -1.93
NEDD4-201ENST00000338963 A6NN06 94 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 C19orf84I3L1E1 186 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 IGLV1-44P01699 117 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 IGLV3-9A0A075B6K5 115 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 ZFAND2AQ8N6M9 145 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 TRBV6-4A0A1B0GX49 114 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 Q6ZRP5 223 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 Q9BRP9 147 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 DPM3Q9P2X0 92 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 CELA1Q9UNI1 258 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 LCTP09848 1927 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 CASP8AP2Q9UKL3 1982 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 COL4A5P29400 1685 aa2.97□□□□□ -1.93
NEDD4-201ENST00000338963 EPOPA6NHQ4 379 aa2.96□□□□□ -1.93
NEDD4-201ENST00000338963 PSCAO43653 123 aa2.96□□□□□ -1.93
NEDD4-201ENST00000338963 KIAA1549LQ6ZVL6 1849 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 LY6HO94772 140 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 ZNF576Q9H609 170 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 CCDC88CQ9P219 2028 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 C9orf116Q5BN46 136 aaPredicted RBP2.96□□□□□ -1.94
NEDD4-201ENST00000338963 Q6ZSV7 163 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 CDKN2A-AS1Q9UH64 79 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 TFF1P04155 84 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV1-2P23083 117 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 COX7BP24311 80 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 SPANXA2-OT1Q8N9U9 137 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 CHD3Q12873 2000 aaKnown RBP2.96□□□□□ -1.94
NEDD4-201ENST00000338963 C10orf142B7Z368 130 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 RNASE3P12724 160 aaKnown RBP2.96□□□□□ -1.94
NEDD4-201ENST00000338963 MNX1P50219 401 aaPredicted RBP2.96□□□□□ -1.94
NEDD4-201ENST00000338963 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.96□□□□□ -1.94
NEDD4-201ENST00000338963 MYO16Q9Y6X6 1858 aa2.96□□□□□ -1.94
NEDD4-201ENST00000338963 SMIM1B2RUZ4 78 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 SEM1Q6ZVN7 128 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 PRR26Q8N8Z3 221 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 B9D2Q9BPU9 175 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 MYO10Q9HD67 2058 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 ETDCA0A1B0GVM5 59 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 MINOS1Q5TGZ0 78 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-16A0A0C4DH30 117 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 GNRH2O43555 120 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 MRGPRG-AS1Q2M3A8 158 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 ATG2AQ2TAZ0 1938 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-72A0A0B4J1Y9 119 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 LOC101927531A0A1B0GV80 90 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 NDUFA4O00483 81 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00208Q96KT6 92 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 GREB1Q4ZG55 1949 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 KLLNB2CW77 178 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 K7EQD1 137 aa2.95□□□□□ -1.94
NEDD4-201ENST00000338963 IGHV3-38A0A0C4DH36 116 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 CCL24O00175 119 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 CCL3L1P16619 93 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 H3BUA1 57 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 CCL18P55774 89 aa2.94□□□□□ -1.94
NEDD4-201ENST00000338963 LINC00337Q8N6G1 96 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms