RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 A0A1B0GUT8 65 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 PRM2P04554 102 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 ANK2Q01484 3957 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 SPRY2O43597 315 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 GIG44P09565 113 aaPredicted RBP7.31□□□□□ -1.24
HMGB3-201ENST00000325307 APOC4P55056 127 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 C2orf91Q6ZV80 131 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 PHLDA3Q9Y5J5 127 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 NOTCH1P46531 2555 aa7.31□□□□□ -1.24
HMGB3-201ENST00000325307 TRGV11A0A075B6L2 103 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 PRB2P02812 416 aaPredicted RBP7.3□□□□□ -1.24
HMGB3-201ENST00000325307 IGLC6P0CF74 106 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 RIGQ13278 110 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 SPANXN1Q5VSR9 72 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 NUDT3O95989 172 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 SEC11AP67812 179 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 TWIST1Q15672 202 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 C1orf158Q8N1D5 194 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 TMEM70Q9BUB7 260 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 MDFICQ9P1T7 246 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 SMIM9A6NGZ8 99 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 SLC25A34Q6PIV7 304 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 OR10AG1Q8NH19 301 aa7.3□□□□□ -1.24
HMGB3-201ENST00000325307 K7EP34 96 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 M0R381 172 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 ZNF493Q6ZR52 646 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 TP73-AS1Q9UF72 201 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 NTF3P20783 257 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 IGHV3-16A0A0C4DH30 117 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 TEX48A0A1B0GUV7 120 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 RNASE3P12724 160 aaKnown RBP7.29□□□□□ -1.24
HMGB3-201ENST00000325307 PMCHL2Q9BQD1 86 aa7.29□□□□□ -1.24
HMGB3-201ENST00000325307 GAGE10A6NGK3 116 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 C9orf118A6NHY6 69 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 H3BRM9 83 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 SYS1-DBNDD2H3BUS1 97 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 OR5AL1P0C617 328 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 DEFB135Q30KP9 77 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 KIR2DL5BQ8NHK3 375 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 GTF2H5Q6ZYL4 71 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 CHCHD1Q96BP2 118 aaKnown RBP7.28□□□□□ -1.24
HMGB3-201ENST00000325307 ZNF415Q09FC8 603 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 RNASEKQ6P5S7 137 aaKnown RBP7.28□□□□□ -1.24
HMGB3-201ENST00000325307 MSRB1Q9NZV6 116 aa7.28□□□□□ -1.24
HMGB3-201ENST00000325307 IGHV1-24A0A0C4DH33 117 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 FGF6P10767 208 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 CSNK1G2-AS1Q8NCQ2 148 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 COX8AP10176 69 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 CACNG7P62955 275 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 RRN3P1Q2M238 152 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 CNFNQ9BYD5 112 aa7.27□□□□□ -1.25
HMGB3-201ENST00000325307 MED14OSP0DP75 135 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 LINC00173Q6ZV60 143 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 NHLRC4P0CG21 123 aaPredicted RBP7.26□□□□□ -1.25
HMGB3-201ENST00000325307 DEFB121Q5J5C9 76 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 AMN1Q8IY45 258 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 U3KQK5 164 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 EMP1P54849 157 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 LINC01545Q5VT33 79 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 SYT8Q8NBV8 401 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 LINC00467Q9BRT7 94 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 NBEAL1Q6ZS30 2694 aa7.26□□□□□ -1.25
HMGB3-201ENST00000325307 HSBP1O75506 76 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 KRTAP21-3Q3LHN1 58 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 OR5A1Q8NGJ0 315 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 C9orf85Q96MD7 179 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 ZNF876PQ49A33 203 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 TMEM263Q8WUH6 116 aaKnown RBP7.25□□□□□ -1.25
HMGB3-201ENST00000325307 NBEAL2Q6ZNJ1 2754 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 CMYA5Q8N3K9 4069 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 hDV102S1A0JD36 115 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 GAS8-AS1O95177 125 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 RNF185Q96GF1 192 aa7.25□□□□□ -1.25
HMGB3-201ENST00000325307 D6R8Y8 96 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 TNFRSF6BO95407 300 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 EVI2AP22794 236 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 FAM104BQ5XKR9 115 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 C16orf74Q96GX8 76 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 A0A096LNJ9 63 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 MRPL51Q4U2R6 128 aaKnown RBP7.24□□□□□ -1.25
HMGB3-201ENST00000325307 C11orf72Q8NBR9 251 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 MAP1LC3CQ9BXW4 147 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 C14orf178Q8N769 122 aaPredicted RBP7.24□□□□□ -1.25
HMGB3-201ENST00000325307 AP1S3Q96PC3 154 aa7.24□□□□□ -1.25
HMGB3-201ENST00000325307 A8MZ25 164 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 M0R2P5 195 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 TMEM97Q5BJF2 176 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 FA2HQ7L5A8 372 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 TMEM191AQ9H0A3 160 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 NOP10Q9NPE3 64 aaKnown RBP7.23□□□□□ -1.25
HMGB3-201ENST00000325307 IGHV4-4A0A075B6R2 117 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 TRGV1A0A0A0MS02 117 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 SMKR1H3BMG3 65 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 FAM74A4Q5TZK3 123 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 ANAPC13Q9BS18 74 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 JPT2Q9H910 190 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 K7EIL1 84 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 MGPP08493 103 aa7.23□□□□□ -1.25
HMGB3-201ENST00000325307 KPRPQ5T749 579 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-201ENST00000325307 MUC4Q99102 2169 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 222.2 ms