RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 M0QY20 66 aa9.98□□□□□ -0.81
SKA3-202ENST00000314759 RHODO00212 210 aa9.98□□□□□ -0.81
SKA3-202ENST00000314759 TMEM263Q8WUH6 116 aaKnown RBP9.98□□□□□ -0.81
SKA3-202ENST00000314759 TRAV2A0A0B4J234 112 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 H3BUX3 64 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 Q8N1Y9 231 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 IGHV3-16A0A0C4DH30 117 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 CCDC179H3BU77 68 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 P0DMU3 169 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 FAM231AP0DMU4 169 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 FAM231CP0DMU5 169 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 C9orf85Q96MD7 179 aa9.97□□□□□ -0.81
SKA3-202ENST00000314759 TMEM223A0PJW6 202 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 IGLV1-40P01703 118 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 IGHV4-39P01824 125 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 ID1P41134 155 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 GAGE2BQ13066 116 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 ZNF56Q15929 161 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 GAGE2EQ4V326 116 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 MUSTN1Q8IVN3 82 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 GAGE2DQ9UEU5 116 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 ZNF580Q9UK33 172 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 TRAV12-2A0A075B6T6 113 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 TEX49A0A1B0GTD5 131 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 A6NDX4 124 aa9.96□□□□□ -0.81
SKA3-202ENST00000314759 NDUFV3P56181 108 aaKnown RBP9.96□□□□□ -0.81
SKA3-202ENST00000314759 BEX4Q9NWD9 120 aaPredicted RBP9.96□□□□□ -0.81
SKA3-202ENST00000314759 LEPROTO15243 131 aa9.96□□□□□ -0.82
SKA3-202ENST00000314759 IGKV3-20P01619 116 aa9.96□□□□□ -0.82
SKA3-202ENST00000314759 NSUN5P1Q3KNT7 163 aa9.96□□□□□ -0.82
SKA3-202ENST00000314759 MAP1AP78559 2803 aaPredicted RBP9.95□□□□□ -0.82
SKA3-202ENST00000314759 SNCGO76070 127 aa9.95□□□□□ -0.82
SKA3-202ENST00000314759 IGHV4-61A0A0C4DH41 118 aa9.95□□□□□ -0.82
SKA3-202ENST00000314759 UCNP55089 124 aa9.95□□□□□ -0.82
SKA3-202ENST00000314759 K7EMT4 169 aa9.94□□□□□ -0.82
SKA3-202ENST00000314759 ZNF22P17026 224 aaPredicted RBP9.94□□□□□ -0.82
SKA3-202ENST00000314759 RHOHQ15669 191 aa9.94□□□□□ -0.82
SKA3-202ENST00000314759 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.94□□□□□ -0.828e-11■■■□□ 18.8
SKA3-202ENST00000314759 C20orf203Q8NBC4 194 aa9.94□□□□□ -0.82
SKA3-202ENST00000314759 ODF3Q96PU9 254 aa9.94□□□□□ -0.82
SKA3-202ENST00000314759 C19orf84I3L1E1 186 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 Q1RN00 199 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 SORL1Q92673 2214 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 LINC01620Q4KN68 170 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 A0A0J9YXV3 536 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 ADARB2-AS1A8MUL3 147 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 CFHR3Q02985 330 aa9.93□□□□□ -0.82
SKA3-202ENST00000314759 TTC32Q5I0X7 151 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 IGLV4-3A0A075B6K6 122 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 A0A0B4J2C4 111 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 A0A0J9YX75 114 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 TMEM95Q3KNT9 176 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 SPTBN4Q9H254 2564 aa9.92□□□□□ -0.82
SKA3-202ENST00000314759 GAGE12JA6NER3 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 M0QXV9 152 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 GAGE7O76087 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 GAGE12FP0CL80 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 GAGE12GP0CL81 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 GAGE12IP0CL82 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 IFITM1P13164 125 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 GAGE4Q13068 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 IGHV1OR15-1A0A075B7D0 117 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 I3L3M4 83 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 SPINK13Q1W4C9 94 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 C15orf53Q8NAA6 179 aa9.91□□□□□ -0.82
SKA3-202ENST00000314759 TRIAP1O43715 76 aa9.9□□□□□ -0.82
SKA3-202ENST00000314759 ATXN8Q156A1 80 aa9.9□□□□□ -0.82
SKA3-202ENST00000314759 M0R2P5 195 aa9.9□□□□□ -0.82
SKA3-202ENST00000314759 CSPG4Q6UVK1 2322 aa9.9□□□□□ -0.82
SKA3-202ENST00000314759 SPG11Q96JI7 2443 aa9.9□□□□□ -0.82
SKA3-202ENST00000314759 TRAV8-4A0A0B4J246 113 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 A0A0J9YXY3 114 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 CRYBG3Q68DQ2 2970 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 Q6ZSV7 163 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 FAM104AQ969W3 186 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 DOPEY2Q9Y3R5 2298 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 SNRPD3P62318 126 aaKnown RBP9.89□□□□□ -0.83
SKA3-202ENST00000314759 C10orf99Q6UWK7 81 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 PIMREGQ9BSJ6 248 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 SPXQ9BT56 116 aa9.89□□□□□ -0.83
SKA3-202ENST00000314759 IGHV3-30-3P0DP02 117 aa9.88□□□□□ -0.83
SKA3-202ENST00000314759 PSMB8P28062 276 aa9.88□□□□□ -0.83
SKA3-202ENST00000314759 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.88□□□□□ -0.83
SKA3-202ENST00000314759 TRBV10-2A0A0K0K1G8 114 aa9.88□□□□□ -0.83
SKA3-202ENST00000314759 K7EQG2 157 aa9.88□□□□□ -0.83
SKA3-202ENST00000314759 NCOR2Q9Y618 2525 aa9.88□□□□□ -0.83
SKA3-202ENST00000314759 RPL13AP40429 203 aaKnown RBP9.87□□□□□ -0.83
SKA3-202ENST00000314759 LITAFQ99732 161 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 CREBBPQ92793 2442 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 PRSS2P07478 247 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 LY6DQ14210 128 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 SMIM20Q8N5G0 67 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 C10orf105Q8TEF2 133 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 CELSR2Q9HCU4 2923 aa9.87□□□□□ -0.83
SKA3-202ENST00000314759 H3BMM0 161 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 ADAMTSL4-AS1Q5T5F5 129 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 CEMP1Q6PRD7 247 aaPredicted RBP9.86□□□□□ -0.83
SKA3-202ENST00000314759 SHISA2Q6UWI4 295 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 UBE2WQ96B02 151 aa9.86□□□□□ -0.83
SKA3-202ENST00000314759 TRAV8-3A0A0A6YYJ7 113 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms