RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 TMEM263Q8WUH6 116 aaKnown RBP7.97□□□□□ -1.13
CLIP1-201ENST00000302528 PLXNB3Q9ULL4 1909 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 UBE2D1P51668 147 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 UBE2D4Q9Y2X8 147 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 MIAQ16674 131 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 SPINK6Q6UWN8 80 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 ENHOQ6UWT2 76 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 PRAC2D3DTV9 90 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 MED14OSP0DP75 135 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 CDPF1Q6NVV7 123 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 Q8N9L7 120 aa7.97□□□□□ -1.13
CLIP1-201ENST00000302528 UQCRQO14949 82 aa7.96□□□□□ -1.13
CLIP1-201ENST00000302528 WT1P19544 449 aaPredicted RBP7.96□□□□□ -1.13
CLIP1-201ENST00000302528 DYSFO75923 2080 aa7.96□□□□□ -1.13
CLIP1-201ENST00000302528 LINC00269Q8N2A0 174 aa7.96□□□□□ -1.14
CLIP1-201ENST00000302528 REG3AQ06141 175 aa7.96□□□□□ -1.14
CLIP1-201ENST00000302528 RNASE8Q8TDE3 154 aaKnown RBP7.96□□□□□ -1.14
CLIP1-201ENST00000302528 C7orf33Q8WU49 177 aa7.96□□□□□ -1.14
CLIP1-201ENST00000302528 K7EMT4 169 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 NDUFA11Q86Y39 141 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 C20orf203Q8NBC4 194 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 GRNP28799 593 aaKnown RBP7.95□□□□□ -1.14
CLIP1-201ENST00000302528 NDUFV3P56181 108 aaKnown RBP7.95□□□□□ -1.14
CLIP1-201ENST00000302528 C4orf3Q8WVX3 66 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 CRYGDP07320 174 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 SIRPDQ9H106 197 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 TRBV6-1A0A0K0K1D8 114 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 ATP5EP2Q5VTU8 51 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 CEMP1Q6PRD7 247 aaPredicted RBP7.95□□□□□ -1.14
CLIP1-201ENST00000302528 C5orf56Q8N8D9 126 aa7.95□□□□□ -1.14
CLIP1-201ENST00000302528 HEATR5AQ86XA9 2040 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 TRBV10-1A0A0K0K1A3 114 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 TCL1BO95988 128 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 IGLC6P0CF74 106 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 FAM19A5Q7Z5A7 132 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-201ENST00000302528 ZFAND2AQ8N6M9 145 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 C9orf85Q96MD7 179 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 SPANXB1Q9NS25 103 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-201ENST00000302528 PROK2Q9HC23 129 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 PCNX2A6NKB5 2137 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 NUPR1O60356 82 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 INSL3P51460 131 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 LYPD6BQ8NI32 183 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 HELZP42694 1942 aaKnown RBP7.94□□□□□ -1.14
CLIP1-201ENST00000302528 PHF3Q92576 2039 aaKnown RBP7.94□□□□□ -1.14
CLIP1-201ENST00000302528 C1orf158Q8N1D5 194 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 MDFICQ9P1T7 246 aa7.94□□□□□ -1.14
CLIP1-201ENST00000302528 ZFP36P26651 326 aaKnown RBP7.93□□□□□ -1.14
CLIP1-201ENST00000302528 TDRG1Q3Y452 100 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 RITA1Q96K30 269 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 COL4A6Q14031 1691 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 ODF1Q14990 250 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 PATE2Q6UY27 113 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 DEFB1P60022 68 aa7.93□□□□□ -1.14
CLIP1-201ENST00000302528 LOXL1Q08397 574 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-201ENST00000302528 SLPIP03973 132 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 COA6Q5JTJ3 125 aaKnown RBP7.92□□□□□ -1.14
CLIP1-201ENST00000302528 CHCHD10Q8WYQ3 142 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-201ENST00000302528 CHD3Q12873 2000 aaKnown RBP7.92□□□□□ -1.14
CLIP1-201ENST00000302528 IGHV4-30-4P0DP06 118 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 IGHV4-31P0DP07 118 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-201ENST00000302528 WFDC13Q8IUB5 93 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 CCKP06307 115 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 EP400Q96L91 3159 aa7.92□□□□□ -1.14
CLIP1-201ENST00000302528 CTRLP40313 264 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 UBE2D3P61077 147 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-201ENST00000302528 C10orf105Q8TEF2 133 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 COL4A4P53420 1690 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-201ENST00000302528 A0A0J9YXY3 114 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 PIK3CD-AS1Q5SR53 167 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 SERP2Q8N6R1 65 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 C3orf84H3BNL1 204 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 PRR4Q16378 134 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 ATP5EP56381 51 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-201ENST00000302528 HILS1P60008 231 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 HRCT1Q6UXD1 115 aa7.91□□□□□ -1.14
CLIP1-201ENST00000302528 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.91□□□□□ -1.146e-7■■■■■ 33
CLIP1-201ENST00000302528 ZNF524Q96C55 264 aa7.9□□□□□ -1.14
CLIP1-201ENST00000302528 RSPO1Q2MKA7 263 aaPredicted RBP7.9□□□□□ -1.14
CLIP1-201ENST00000302528 PPDPFQ9H3Y8 114 aa7.9□□□□□ -1.14
CLIP1-201ENST00000302528 TMEM89A2RUT3 159 aa7.9□□□□□ -1.14
CLIP1-201ENST00000302528 NRGNQ92686 78 aa7.9□□□□□ -1.14
CLIP1-201ENST00000302528 LY6G6EA0A0G2JKS1 128 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 A0A0J9YX75 114 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 FAM19A3Q7Z5A8 133 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 MAP6D1Q9H9H5 199 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 DENND4CQ5VZ89 1909 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 DEFB131BA0A096LNP1 70 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 C11orf53Q8IXP5 236 aa7.9□□□□□ -1.15
CLIP1-201ENST00000302528 ZNF706Q9Y5V0 76 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-201ENST00000302528 NDUFC1O43677 76 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 SPRNQ5BIV9 151 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 MT-ATP8P03928 68 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 P0DMU3 169 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 FAM231AP0DMU4 169 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 FAM231CP0DMU5 169 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 ZFAND3Q9H8U3 227 aa7.89□□□□□ -1.15
CLIP1-201ENST00000302528 XAGE1AQ9HD64 81 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms