RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SMIM26A0A096LP01 95 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 SAA4P35542 130 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 GDF5OSQ5U4N7 250 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 BRWD3Q6RI45 1802 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 SEM1Q6ZVN7 128 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 LOC107984640A0A0U1RRK4 108 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 CGB3P0DN86 165 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 RNF166Q96A37 237 aaPredicted RBP9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 C17orf58Q2M2W7 97 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 IGKV1OR2-108A0A075B7D4 117 aa9.15□□□□□ -0.94
SHROOM3-201ENST00000296043 TRBV27A0A0K0K1C4 114 aa9.15□□□□□ -0.95
SHROOM3-201ENST00000296043 PRR15LQ9BU68 103 aa9.15□□□□□ -0.95
SHROOM3-201ENST00000296043 IGLV3-9A0A075B6K5 115 aa9.15□□□□□ -0.95
SHROOM3-201ENST00000296043 PIEZO2Q9H5I5 2752 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 A0A0J9YY99 117 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 CGB7P0DN87 165 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 SERP1Q9Y6X1 66 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 WDR90Q96KV7 1748 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 NDUFC1O43677 76 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 IGHV3-30-3P0DP02 117 aa9.14□□□□□ -0.95
SHROOM3-201ENST00000296043 IGHV1-69DA0A0B4J2H0 117 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 TEX22C9J3V5 150 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 CTRLP40313 264 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 C15orf65H3BRN8 121 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 LHBP01229 141 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 IGHV7-4-1A0A0J9YVY3 117 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 PDE6GP18545 87 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 WFDC10BQ8IUB3 73 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 TM2D2Q9BX73 214 aa9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 KLK5Q9Y337 293 aaPredicted RBP9.13□□□□□ -0.95
SHROOM3-201ENST00000296043 TIRAPP58753 221 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 COL8A2P25067 703 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 A0A0J9YXY3 114 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 C5orf67F2Z3F1 127 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 NDUFA4O00483 81 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 MIR7-3HGQ8N6C7 128 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 K7ERS5 55 aa9.12□□□□□ -0.95
SHROOM3-201ENST00000296043 IGLV3-12A0A075B6K2 115 aa9.11□□□□□ -0.95
SHROOM3-201ENST00000296043 PSPHP1O15172 72 aa9.11□□□□□ -0.95
SHROOM3-201ENST00000296043 MAPKAPK5-AS1Q8N8E1 139 aa9.11□□□□□ -0.95
SHROOM3-201ENST00000296043 LYRM9A8MSI8 78 aa9.11□□□□□ -0.95
SHROOM3-201ENST00000296043 IGKV2D-24A0A075B6R9 120 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 DIAPH2-AS1Q14236 149 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 SHISA2Q6UWI4 295 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 CAMK2N2Q96S95 79 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 DIRC1Q969H9 104 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 FAM167A-AS1Q96KT0 104 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 PPDPFQ9H3Y8 114 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 COX7BP24311 80 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 NPBQ8NG41 125 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 MRPL36Q9P0J6 103 aaKnown RBP9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 IGHV1-58A0A0C4DH39 117 aa9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 CSRP1P21291 193 aaKnown RBP9.1□□□□□ -0.95
SHROOM3-201ENST00000296043 UCNP55089 124 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 C2orf91Q6ZV80 131 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 PLA2G5P39877 138 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 CRIPAKQ8N1N5 446 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 SERTAD4-AS1Q5TG53 156 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 FAM19A3Q7Z5A8 133 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 LRRK2Q5S007 2527 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 CD59P13987 128 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 GYPEP15421 78 aa9.09□□□□□ -0.95
SHROOM3-201ENST00000296043 P0DMU3 169 aa9.09□□□□□ -0.96
SHROOM3-201ENST00000296043 FAM231AP0DMU4 169 aa9.09□□□□□ -0.96
SHROOM3-201ENST00000296043 FAM231CP0DMU5 169 aa9.09□□□□□ -0.96
SHROOM3-201ENST00000296043 NANOS2P60321 138 aaKnown RBP9.09□□□□□ -0.96
SHROOM3-201ENST00000296043 Q6Q795 121 aa9.09□□□□□ -0.96
SHROOM3-201ENST00000296043 EPOPA6NHQ4 379 aa9.08□□□□□ -0.96
SHROOM3-201ENST00000296043 FGF23Q9GZV9 251 aaPredicted RBP9.08□□□□□ -0.96
SHROOM3-201ENST00000296043 GATA3P23771 443 aa9.08□□□□□ -0.96
SHROOM3-201ENST00000296043 K7EQD1 137 aa9.08□□□□□ -0.96
SHROOM3-201ENST00000296043 CASC2Q6XLA1 102 aa9.08□□□□□ -0.96
SHROOM3-201ENST00000296043 TMEM263Q8WUH6 116 aaKnown RBP9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 B3GALT5-AS1P59052 145 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 A0A1B0GXF2 115 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 CEMP1Q6PRD7 247 aaPredicted RBP9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 ADAMTS20P59510 1910 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 LINC01619G3V211 115 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 POM121L12Q8N7R1 296 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 PATE2Q6UY27 113 aa9.07□□□□□ -0.96
SHROOM3-201ENST00000296043 SPTBN4Q9H254 2564 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 PRAC2D3DTV9 90 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 FOXL2NBQ6ZUU3 175 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 MBD3L4A6NDZ8 208 aaPredicted RBP9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 MBD3L3A6NE82 208 aaPredicted RBP9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 MBD3L5A6NJ08 208 aaPredicted RBP9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 TP53TG3Q9ULZ0 132 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 MIFP14174 115 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 IMUPQ9GZP8 106 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 FAM30AQ9NZY2 134 aa9.06□□□□□ -0.96
SHROOM3-201ENST00000296043 IGHV1-69P01742 117 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 Q0VFX4 171 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 NRGNQ92686 78 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 RMI2Q96E14 147 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 IGHV3-30P01768 117 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 IGHV3-33P01772 117 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 IGHV3-30-5P0DP03 117 aa9.05□□□□□ -0.96
SHROOM3-201ENST00000296043 YPEL4Q96NS1 127 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms