RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MRPL53Q96EL3 112 aaKnown RBP7.9□□□□□ -1.15
USP28-201ENST00000003302 TMEM170BQ5T4T1 132 aa7.9□□□□□ -1.15
USP28-201ENST00000003302 Q6ZSN1 163 aa7.9□□□□□ -1.15
USP28-201ENST00000003302 KIR2DL4Q99706 377 aa7.9□□□□□ -1.15
USP28-201ENST00000003302 LOC107984156A0A0G2JMH3 177 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 A0A0J9YY99 117 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 FAM223BA6NKX1 122 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 DEFB112Q30KQ8 113 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 ARL17AQ8IVW1 177 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 FAM223AQ8IWN6 122 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 OR5A1Q8NGJ0 315 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 C10orf105Q8TEF2 133 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 SMPXQ9UHP9 88 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 SCGB2A1O75556 95 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 ATP5J2P56134 94 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 CFHR3Q02985 330 aa7.89□□□□□ -1.15
USP28-201ENST00000003302 DAZ1Q9NQZ3 744 aaKnown RBP7.89□□□□□ -1.15
USP28-201ENST00000003302 ANK3Q12955 4377 aaKnown RBP7.89□□□□□ -1.15
USP28-201ENST00000003302 APRG1Q8IVJ8 170 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 MRPL16Q9NX20 251 aaKnown RBP7.88□□□□□ -1.15
USP28-201ENST00000003302 TRAV12-1A0A0B4J245 112 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 H7C2G1 150 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 RAX2Q96IS3 184 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 TRAV8-3A0A0A6YYJ7 113 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 CFC1BP0CG36 223 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 CFC1P0CG37 223 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 ORMDL2Q53FV1 153 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 FAM159AQ6UWV7 190 aa7.88□□□□□ -1.15
USP28-201ENST00000003302 NPC2P61916 151 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 SRSF9Q13242 221 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP28-201ENST00000003302 A0A0J9YXV3 536 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 A0A1B0GWB2 263 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 UBE2D1P51668 147 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 CCL19Q99731 98 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 IGHV3-16A0A0C4DH30 117 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 M0QY20 66 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 IGHV4OR15-8A0A075B7B6 117 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 A0A087WW49 117 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 GAGE12HA6NDE8 117 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 TCL1BO95988 128 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 PSMB8P28062 276 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 ZNF56Q15929 161 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 TRPT1Q86TN4 253 aaKnown RBP7.87□□□□□ -1.15
USP28-201ENST00000003302 CARD19Q96LW7 228 aa7.87□□□□□ -1.15
USP28-201ENST00000003302 OVOL1O14753 267 aa7.86□□□□□ -1.15
USP28-201ENST00000003302 PSMB2P49721 201 aa7.86□□□□□ -1.15
USP28-201ENST00000003302 KRTAP10-9P60411 292 aa7.86□□□□□ -1.15
USP28-201ENST00000003302 GAGE13Q4V321 117 aa7.86□□□□□ -1.15
USP28-201ENST00000003302 RBMY1BA6NDE4 496 aaKnown RBP7.86□□□□□ -1.15
USP28-201ENST00000003302 RBMY1EA6NEQ0 496 aaKnown RBP7.86□□□□□ -1.15
USP28-201ENST00000003302 HOXA3O43365 443 aaPredicted RBP7.86□□□□□ -1.15
USP28-201ENST00000003302 RBMY1DP0C7P1 496 aaKnown RBP7.86□□□□□ -1.15
USP28-201ENST00000003302 IGHV3-38A0A0C4DH36 116 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 MSMBP08118 114 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 SCGB2A2Q13296 93 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 NXPH4O95158 308 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 C10orf126Q8N4M7 172 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 IGHV3-30P01768 117 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 IGHV3-30-5P0DP03 117 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 CFAP126Q5VTH2 177 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 BEX4Q9NWD9 120 aaPredicted RBP7.85□□□□□ -1.15
USP28-201ENST00000003302 SLURP1P55000 103 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 ZNF876PQ49A33 203 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 NDUFA11Q86Y39 141 aa7.85□□□□□ -1.15
USP28-201ENST00000003302 DAND5Q8N907 189 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 CDIP1Q9H305 208 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 LENEPQ9Y5L5 61 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 A0A0J9YX75 114 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 NDUFA7O95182 113 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 C11orf44Q8N8P7 122 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.84□□□□□ -1.15
USP28-201ENST00000003302 HECTD1Q9ULT8 2610 aa7.84□□□□□ -1.15
USP28-201ENST00000003302 POM121L12Q8N7R1 296 aa7.84□□□□□ -1.16
USP28-201ENST00000003302 MT-ATP8P03928 68 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 ADAMTSL4-AS1Q5T5F5 129 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 SAMD13Q5VXD3 122 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 C9orf85Q96MD7 179 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 TRBV27A0A0K0K1C4 114 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 A4D1N5 150 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 PMVKQ15126 192 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 SYT8Q8NBV8 401 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 SPXQ9BT56 116 aa7.83□□□□□ -1.16
USP28-201ENST00000003302 PIMREGQ9BSJ6 248 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 FASNP49327 2511 aaKnown RBP7.82□□□□□ -1.16
USP28-201ENST00000003302 F8W1H4 67 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 TRAV2A0A0B4J234 112 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 J3QQQ9 107 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 XGP55808 180 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 UBE2D3P61077 147 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 UBE2D2P62837 147 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 USMG5Q96IX5 58 aa7.82□□□□□ -1.16
USP28-201ENST00000003302 ZNF22P17026 224 aaPredicted RBP7.81□□□□□ -1.16
USP28-201ENST00000003302 SIGMAR1Q99720 223 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 PRORYQ9H606 182 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 K7EQG2 157 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 HOXD3P31249 432 aaPredicted RBP7.81□□□□□ -1.16
USP28-201ENST00000003302 IGLV4-3A0A075B6K6 122 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.81□□□□□ -1.16
USP28-201ENST00000003302 IGKV2-29A2NJV5 120 aaPredicted RBP7.81□□□□□ -1.16
USP28-201ENST00000003302 UCNP55089 124 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms