RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Scgb1b24B1B0N6 92 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 AponG3X9D6 251 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Klf12O35738 402 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Sox15P43267 231 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 H2-M10.4Q85ZW8 331 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr482Q8VG03 323 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Tex36Q9D5N9 219 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 PoleQ9WVF7 2283 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Scgb1b11A0A087WQJ0 93 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 GrnP28798 589 aaKnown RBP13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Fam3dP97805 223 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Defa24Q5G865 93 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Duxbl2Q7TNE6 350 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr965Q7TRA7 312 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr877Q8VF62 311 aa13□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm45623A0A1B0GSF6 103 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Plcxd2B2RXA1 340 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Arf6P62331 175 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Rab37Q9JKM7 223 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Bhlha15Q9QYC3 197 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Trav3n-3A0A0G2JEM0 114 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Immp2lQ8BPT6 175 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Wfdc21Q8BTE6 63 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ss18l1Q8BW22 402 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr223Q8VF69 319 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm21882J3QN86 361 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 P01680 129 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Cd96Q3U0X8 602 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 NotoQ5TIS6 240 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Tcf15Q60756 195 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Rnd2Q9QYM5 227 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 H2al3Q9D4U4 128 aa12.99□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Myo7bQ99MZ6 2113 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 B020031M17RikQ3UT11 173 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 P01655 112 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Cldn23Q9D7D7 296 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Zcchc24B2RVL6 241 aaKnown RBP12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 PpoxP51175 477 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm5150Q1AN92 299 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Rtl4Q3URY0 304 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr476Q8VGI4 310 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Tmem140Q8BGY5 185 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Q8CF25 301 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ms4a8Q99N10 290 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Rspo1Q9Z132 265 aa12.98□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ren2P00796 401 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 LtbP41155 306 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Srrm4Q8BKA3 608 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Dynlrb2Q9DAJ5 96 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 A0A1Y7VLU2 103 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 V1rd19Q3KNP5 305 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 AgerQ62151 402 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ovol2Q8CIV7 274 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Onecut2Q6XBJ3 505 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 BsxQ810B3 232 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Spry4Q9WTP2 300 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Trbv1A0A0B4J1G7 116 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr1333Q7TQV7 317 aa12.97□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Ifitm7G3X9Z2 141 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Gm21719J3KMI9 230 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 SnrpcQ62241 159 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Fstl3Q9EQC7 256 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Prok2Q9QXU7 128 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 AplnrQ9WV08 377 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Arl6ip6Q8BH07 226 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Olfr1441Q8VFV3 318 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Insig2Q91WG1 225 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Scrt1Q99M85 348 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Tnfrsf13cQ9D8D0 175 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 LitafQ9JLJ0 161 aa12.96□□□□□ -0.33
Ccdc88b-201ENSMUST00000113440 Sptan1P16546 2472 aaKnown RBP12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Wisp3D3Z5L9 354 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr1185-ps1F6XP16 303 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr1331K7N684 317 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cited2O35740 269 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gng4P50153 75 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Map1lc3aQ91VR7 121 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Rnase9P60154 184 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 AsipQ03288 131 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Pate4Q09098 99 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Reep5Q60870 185 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Dnal4Q9DCM4 105 aa12.96□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 A0A1L1SR50 188 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Srp14P16254 110 aaKnown RBP12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gstp1P19157 210 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm10645Q3UPY1 145 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Q8VC23 124 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Vmn1r54Q9EPB8 315 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Mixl1Q9WUI0 231 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Tln2Q71LX4 2375 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm3045A0A1D5RMA1 209 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm6970F7DCP6 221 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm21874J3QNZ6 232 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Defb33Q30KN3 62 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cd5lQ9QWK4 352 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav13n-4A0A0G2JG01 110 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm14548E9Q1Z6 680 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ammecr1lQ8JZZ6 310 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ndufs8Q8K3J1 212 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ssbp3Q9D032 388 aa12.95□□□□□ -0.34
Retrieved 100 of 22,080 RNA–protein pairs in 77.7 ms