Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25,07■■□□□ 1,6
Trav3n-3A0A0G2JEM0 Gm25239-201ENSMUST00000174915 86 ntBASIC25,02■■□□□ 1,6
Trav3n-3A0A0G2JEM0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24,82■■□□□ 1,56
Trav3n-3A0A0G2JEM0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24,42■■□□□ 1,5
Trav3n-3A0A0G2JEM0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23,89■■□□□ 1,41
Trav3n-3A0A0G2JEM0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,85■■□□□ 1,41
Trav3n-3A0A0G2JEM0 Psd-208ENSMUST00000224556 2034 ntBASIC23,77■■□□□ 1,4
Trav3n-3A0A0G2JEM0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22,9■■□□□ 1,26
Trav3n-3A0A0G2JEM0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22,84■■□□□ 1,25
Trav3n-3A0A0G2JEM0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22,84■■□□□ 1,25
Trav3n-3A0A0G2JEM0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22,81■■□□□ 1,24
Trav3n-3A0A0G2JEM0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22,73■■□□□ 1,23
Trav3n-3A0A0G2JEM0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22,72■■□□□ 1,23
Trav3n-3A0A0G2JEM0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22,69■■□□□ 1,22
Trav3n-3A0A0G2JEM0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22,69■■□□□ 1,22
Trav3n-3A0A0G2JEM0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC22,68■■□□□ 1,22
Trav3n-3A0A0G2JEM0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22,64■■□□□ 1,22
Trav3n-3A0A0G2JEM0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22,6■■□□□ 1,21
Trav3n-3A0A0G2JEM0 Gm15042-201ENSMUST00000120212 883 ntBASIC22,52■■□□□ 1,2
Trav3n-3A0A0G2JEM0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22,43■■□□□ 1,18
Trav3n-3A0A0G2JEM0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22,36■■□□□ 1,17
Trav3n-3A0A0G2JEM0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22,29■■□□□ 1,16
Trav3n-3A0A0G2JEM0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22,28■■□□□ 1,16
Trav3n-3A0A0G2JEM0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22,24■■□□□ 1,15
Trav3n-3A0A0G2JEM0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22,21■■□□□ 1,15
Trav3n-3A0A0G2JEM0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22,18■■□□□ 1,14
Trav3n-3A0A0G2JEM0 Gm42596-201ENSMUST00000196305 1958 ntBASIC22,18■■□□□ 1,14
Trav3n-3A0A0G2JEM0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22,13■■□□□ 1,13
Trav3n-3A0A0G2JEM0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22,12■■□□□ 1,13
Trav3n-3A0A0G2JEM0 Gm15045-201ENSMUST00000117359 883 ntBASIC22,07■■□□□ 1,12
Trav3n-3A0A0G2JEM0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21,8■■□□□ 1,08
Trav3n-3A0A0G2JEM0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21,8■■□□□ 1,08
Trav3n-3A0A0G2JEM0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21,79■■□□□ 1,08
Trav3n-3A0A0G2JEM0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21,73■■□□□ 1,07
Trav3n-3A0A0G2JEM0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21,67■■□□□ 1,06
Trav3n-3A0A0G2JEM0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21,66■■□□□ 1,06
Trav3n-3A0A0G2JEM0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21,64■■□□□ 1,06
Trav3n-3A0A0G2JEM0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21,53■■□□□ 1,04
Trav3n-3A0A0G2JEM0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21,51■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21,5■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21,48■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21,48■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21,47■■□□□ 1,03
Trav3n-3A0A0G2JEM0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21,42■■□□□ 1,02
Trav3n-3A0A0G2JEM0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21,4■■□□□ 1,02
Trav3n-3A0A0G2JEM0 Gm24109-201ENSMUST00000175489 103 ntBASIC21,36■■□□□ 1,01
Trav3n-3A0A0G2JEM0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21,35■■□□□ 1,01
Trav3n-3A0A0G2JEM0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21,35■■□□□ 1,01
Trav3n-3A0A0G2JEM0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21,31■■□□□ 1
Trav3n-3A0A0G2JEM0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21,29■■□□□ 1
Trav3n-3A0A0G2JEM0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21,27■■□□□ 1
Trav3n-3A0A0G2JEM0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Trav3n-3A0A0G2JEM0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21,25■□□□□ 0,99
Trav3n-3A0A0G2JEM0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21,24■□□□□ 0,99
Trav3n-3A0A0G2JEM0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21,23■□□□□ 0,99
Trav3n-3A0A0G2JEM0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21,16■□□□□ 0,98
Trav3n-3A0A0G2JEM0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21,15■□□□□ 0,98
Trav3n-3A0A0G2JEM0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21,14■□□□□ 0,98
Trav3n-3A0A0G2JEM0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21,1■□□□□ 0,97
Trav3n-3A0A0G2JEM0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21,1■□□□□ 0,97
Trav3n-3A0A0G2JEM0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21,1■□□□□ 0,97
Trav3n-3A0A0G2JEM0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21,09■□□□□ 0,97
Trav3n-3A0A0G2JEM0 Gm23366-201ENSMUST00000175022 89 ntBASIC21,07■□□□□ 0,96
Trav3n-3A0A0G2JEM0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21,07■□□□□ 0,96
Trav3n-3A0A0G2JEM0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21,05■□□□□ 0,96
Trav3n-3A0A0G2JEM0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21,04■□□□□ 0,96
Trav3n-3A0A0G2JEM0 Gm10524-201ENSMUST00000181931 1893 ntBASIC21,03■□□□□ 0,96
Trav3n-3A0A0G2JEM0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20,99■□□□□ 0,95
Trav3n-3A0A0G2JEM0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20,98■□□□□ 0,95
Trav3n-3A0A0G2JEM0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20,98■□□□□ 0,95
Trav3n-3A0A0G2JEM0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20,95■□□□□ 0,94
Trav3n-3A0A0G2JEM0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20,94■□□□□ 0,94
Trav3n-3A0A0G2JEM0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20,94■□□□□ 0,94
Trav3n-3A0A0G2JEM0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20,9■□□□□ 0,94
Trav3n-3A0A0G2JEM0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20,9■□□□□ 0,94
Trav3n-3A0A0G2JEM0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20,88■□□□□ 0,93
Trav3n-3A0A0G2JEM0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20,87■□□□□ 0,93
Trav3n-3A0A0G2JEM0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20,84■□□□□ 0,93
Trav3n-3A0A0G2JEM0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20,84■□□□□ 0,93
Trav3n-3A0A0G2JEM0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20,79■□□□□ 0,92
Trav3n-3A0A0G2JEM0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20,75■□□□□ 0,91
Trav3n-3A0A0G2JEM0 Zxda-201ENSMUST00000117281 2621 ntBASIC20,73■□□□□ 0,91
Trav3n-3A0A0G2JEM0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20,72■□□□□ 0,91
Trav3n-3A0A0G2JEM0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20,71■□□□□ 0,91
Trav3n-3A0A0G2JEM0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20,65■□□□□ 0,9
Trav3n-3A0A0G2JEM0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20,64■□□□□ 0,9
Trav3n-3A0A0G2JEM0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20,63■□□□□ 0,89
Trav3n-3A0A0G2JEM0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20,63■□□□□ 0,89
Trav3n-3A0A0G2JEM0 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20,55■□□□□ 0,88
Trav3n-3A0A0G2JEM0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20,49■□□□□ 0,87
Trav3n-3A0A0G2JEM0 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20,48■□□□□ 0,87
Trav3n-3A0A0G2JEM0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20,47■□□□□ 0,87
Trav3n-3A0A0G2JEM0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20,46■□□□□ 0,87
Trav3n-3A0A0G2JEM0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20,46■□□□□ 0,87
Trav3n-3A0A0G2JEM0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20,44■□□□□ 0,86
Trav3n-3A0A0G2JEM0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20,43■□□□□ 0,86
Trav3n-3A0A0G2JEM0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20,42■□□□□ 0,86
Trav3n-3A0A0G2JEM0 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20,41■□□□□ 0,86
Trav3n-3A0A0G2JEM0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20,38■□□□□ 0,85
Retrieved 100 of 76,532 protein–RNA pairs in 11,5 ms