Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Trav3n-3A0A0G2JEM0 Gm25239-201ENSMUST00000174915 86 ntBASIC25.02■■□□□ 1.6
Trav3n-3A0A0G2JEM0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav3n-3A0A0G2JEM0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trav3n-3A0A0G2JEM0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
Trav3n-3A0A0G2JEM0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav3n-3A0A0G2JEM0 Psd-208ENSMUST00000224556 2034 ntBASIC23.77■■□□□ 1.4
Trav3n-3A0A0G2JEM0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav3n-3A0A0G2JEM0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Trav3n-3A0A0G2JEM0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav3n-3A0A0G2JEM0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trav3n-3A0A0G2JEM0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trav3n-3A0A0G2JEM0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Trav3n-3A0A0G2JEM0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Trav3n-3A0A0G2JEM0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav3n-3A0A0G2JEM0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trav3n-3A0A0G2JEM0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Trav3n-3A0A0G2JEM0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav3n-3A0A0G2JEM0 Gm15042-201ENSMUST00000120212 883 ntBASIC22.52■■□□□ 1.2
Trav3n-3A0A0G2JEM0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav3n-3A0A0G2JEM0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav3n-3A0A0G2JEM0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trav3n-3A0A0G2JEM0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trav3n-3A0A0G2JEM0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trav3n-3A0A0G2JEM0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav3n-3A0A0G2JEM0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trav3n-3A0A0G2JEM0 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.18■■□□□ 1.14
Trav3n-3A0A0G2JEM0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
Trav3n-3A0A0G2JEM0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.12■■□□□ 1.13
Trav3n-3A0A0G2JEM0 Gm15045-201ENSMUST00000117359 883 ntBASIC22.07■■□□□ 1.12
Trav3n-3A0A0G2JEM0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav3n-3A0A0G2JEM0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav3n-3A0A0G2JEM0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav3n-3A0A0G2JEM0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trav3n-3A0A0G2JEM0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trav3n-3A0A0G2JEM0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.66■■□□□ 1.06
Trav3n-3A0A0G2JEM0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trav3n-3A0A0G2JEM0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav3n-3A0A0G2JEM0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.51■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav3n-3A0A0G2JEM0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav3n-3A0A0G2JEM0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.4■■□□□ 1.02
Trav3n-3A0A0G2JEM0 Gm24109-201ENSMUST00000175489 103 ntBASIC21.36■■□□□ 1.01
Trav3n-3A0A0G2JEM0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav3n-3A0A0G2JEM0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav3n-3A0A0G2JEM0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trav3n-3A0A0G2JEM0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav3n-3A0A0G2JEM0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trav3n-3A0A0G2JEM0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav3n-3A0A0G2JEM0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trav3n-3A0A0G2JEM0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trav3n-3A0A0G2JEM0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.23■□□□□ 0.99
Trav3n-3A0A0G2JEM0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav3n-3A0A0G2JEM0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav3n-3A0A0G2JEM0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trav3n-3A0A0G2JEM0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav3n-3A0A0G2JEM0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav3n-3A0A0G2JEM0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.1■□□□□ 0.97
Trav3n-3A0A0G2JEM0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.09■□□□□ 0.97
Trav3n-3A0A0G2JEM0 Gm23366-201ENSMUST00000175022 89 ntBASIC21.07■□□□□ 0.96
Trav3n-3A0A0G2JEM0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav3n-3A0A0G2JEM0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav3n-3A0A0G2JEM0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.04■□□□□ 0.96
Trav3n-3A0A0G2JEM0 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.03■□□□□ 0.96
Trav3n-3A0A0G2JEM0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav3n-3A0A0G2JEM0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trav3n-3A0A0G2JEM0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav3n-3A0A0G2JEM0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav3n-3A0A0G2JEM0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trav3n-3A0A0G2JEM0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav3n-3A0A0G2JEM0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav3n-3A0A0G2JEM0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav3n-3A0A0G2JEM0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav3n-3A0A0G2JEM0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav3n-3A0A0G2JEM0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav3n-3A0A0G2JEM0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.84■□□□□ 0.93
Trav3n-3A0A0G2JEM0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trav3n-3A0A0G2JEM0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trav3n-3A0A0G2JEM0 Zxda-201ENSMUST00000117281 2621 ntBASIC20.73■□□□□ 0.91
Trav3n-3A0A0G2JEM0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Trav3n-3A0A0G2JEM0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Trav3n-3A0A0G2JEM0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20.65■□□□□ 0.9
Trav3n-3A0A0G2JEM0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trav3n-3A0A0G2JEM0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav3n-3A0A0G2JEM0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav3n-3A0A0G2JEM0 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav3n-3A0A0G2JEM0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
Trav3n-3A0A0G2JEM0 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trav3n-3A0A0G2JEM0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav3n-3A0A0G2JEM0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav3n-3A0A0G2JEM0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav3n-3A0A0G2JEM0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav3n-3A0A0G2JEM0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.43■□□□□ 0.86
Trav3n-3A0A0G2JEM0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trav3n-3A0A0G2JEM0 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav3n-3A0A0G2JEM0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms