Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Gm25239-201ENSMUST00000174915 86 ntBASIC34.03■■■■□ 3.04
Scrt1Q99M85 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Scrt1Q99M85 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Scrt1Q99M85 Gm24109-201ENSMUST00000175489 103 ntBASIC29.72■■■□□ 2.35
Scrt1Q99M85 Gm15042-201ENSMUST00000120212 883 ntBASIC29.28■■■□□ 2.28
Scrt1Q99M85 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
Scrt1Q99M85 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Scrt1Q99M85 Gm15045-201ENSMUST00000117359 883 ntBASIC28.59■■■□□ 2.17
Scrt1Q99M85 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Scrt1Q99M85 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Scrt1Q99M85 Gm23366-201ENSMUST00000175022 89 ntBASIC28.31■■■□□ 2.12
Scrt1Q99M85 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.9■■■□□ 2.06
Scrt1Q99M85 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Scrt1Q99M85 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.62■■■□□ 2.01
Scrt1Q99M85 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.59■■■□□ 2.01
Scrt1Q99M85 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Scrt1Q99M85 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Scrt1Q99M85 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Scrt1Q99M85 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Scrt1Q99M85 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
Scrt1Q99M85 Gm25238-201ENSMUST00000174914 89 ntBASIC27.02■■□□□ 1.92
Scrt1Q99M85 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.97■■□□□ 1.91
Scrt1Q99M85 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Scrt1Q99M85 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Scrt1Q99M85 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Scrt1Q99M85 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
Scrt1Q99M85 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scrt1Q99M85 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Scrt1Q99M85 Psd-208ENSMUST00000224556 2034 ntBASIC26.42■■□□□ 1.82
Scrt1Q99M85 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Scrt1Q99M85 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
Scrt1Q99M85 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Scrt1Q99M85 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.23■■□□□ 1.79
Scrt1Q99M85 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Scrt1Q99M85 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
Scrt1Q99M85 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
Scrt1Q99M85 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Scrt1Q99M85 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Scrt1Q99M85 Gm25262-201ENSMUST00000174934 133 ntBASIC26.04■■□□□ 1.76
Scrt1Q99M85 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.01■■□□□ 1.75
Scrt1Q99M85 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.96■■□□□ 1.75
Scrt1Q99M85 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scrt1Q99M85 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.75■■□□□ 1.71
Scrt1Q99M85 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.74■■□□□ 1.71
Scrt1Q99M85 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC25.62■■□□□ 1.69
Scrt1Q99M85 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
Scrt1Q99M85 Gm27325-201ENSMUST00000175467 74 ntBASIC25.59■■□□□ 1.69
Scrt1Q99M85 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scrt1Q99M85 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC25.58■■□□□ 1.69
Scrt1Q99M85 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC25.58■■□□□ 1.69
Scrt1Q99M85 Gm26115-201ENSMUST00000175605 87 ntBASIC25.55■■□□□ 1.68
Scrt1Q99M85 Gm8109-201ENSMUST00000194076 746 ntBASIC25.43■■□□□ 1.66
Scrt1Q99M85 Rab21-202ENSMUST00000218831 843 ntBASIC25.38■■□□□ 1.65
Scrt1Q99M85 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.37■■□□□ 1.65
Scrt1Q99M85 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Scrt1Q99M85 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Scrt1Q99M85 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Scrt1Q99M85 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Scrt1Q99M85 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scrt1Q99M85 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Scrt1Q99M85 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Scrt1Q99M85 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Scrt1Q99M85 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Scrt1Q99M85 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scrt1Q99M85 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.15■■□□□ 1.62
Scrt1Q99M85 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.12■■□□□ 1.61
Scrt1Q99M85 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
Scrt1Q99M85 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Scrt1Q99M85 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.98■■□□□ 1.59
Scrt1Q99M85 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Scrt1Q99M85 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scrt1Q99M85 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.91■■□□□ 1.58
Scrt1Q99M85 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scrt1Q99M85 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scrt1Q99M85 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Scrt1Q99M85 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Scrt1Q99M85 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.78■■□□□ 1.56
Scrt1Q99M85 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Scrt1Q99M85 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Scrt1Q99M85 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Scrt1Q99M85 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.69■■□□□ 1.54
Scrt1Q99M85 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Scrt1Q99M85 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scrt1Q99M85 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Scrt1Q99M85 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Scrt1Q99M85 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Scrt1Q99M85 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.64■■□□□ 1.53
Scrt1Q99M85 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scrt1Q99M85 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scrt1Q99M85 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.58■■□□□ 1.53
Scrt1Q99M85 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.56■■□□□ 1.52
Scrt1Q99M85 Gm24804-201ENSMUST00000174982 85 ntBASIC24.53■■□□□ 1.52
Scrt1Q99M85 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.48■■□□□ 1.51
Scrt1Q99M85 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scrt1Q99M85 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Scrt1Q99M85 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
Scrt1Q99M85 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.37■■□□□ 1.49
Scrt1Q99M85 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC24.34■■□□□ 1.49
Scrt1Q99M85 Gm27322-201ENSMUST00000184007 104 ntBASIC24.34■■□□□ 1.49
Scrt1Q99M85 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms