RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 TIMM17AQ99595 171 aa15.05■□□□□ 0
SYNGAP1-227ENST00000638142 MRPL16Q9NX20 251 aaKnown RBP15.05■□□□□ 0
SYNGAP1-227ENST00000638142 INSL3P51460 131 aa15.05■□□□□ -0
SYNGAP1-227ENST00000638142 SRSF9Q13242 221 aaKnown RBP eCLIP15.05■□□□□ -0
SYNGAP1-227ENST00000638142 SRD5A1P18405 259 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CFAP126Q5VTH2 177 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 C10orf105Q8TEF2 133 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 DCANP1Q8TF63 244 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 DLX4Q92988 240 aaPredicted RBP15.04■□□□□ -0
SYNGAP1-227ENST00000638142 A0A1B0GV72 72 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 APOMO95445 188 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CFHR3Q02985 330 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 Q6ZS46 218 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 JPT2Q9H910 190 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CD7P09564 240 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 C1QTNF4Q9BXJ3 329 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 TRBV6-5A0A0K0K1A5 114 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 TRBV27A0A0K0K1C4 114 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 LGALS9O00182 355 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 CLEC2AQ6UVW9 174 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 KLHL30-AS1Q8NEE0 82 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 A0A087WWL8 130 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 SDHAF1A6NFY7 115 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 F5H697 171 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 FOXI1Q12951 378 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 ODF3Q96PU9 254 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 TRAV12-3A0A0B4J271 114 aa15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 SMCPP49901 116 aaPredicted RBP15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 RPL39P62891 51 aaKnown RBP15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNF580Q9UK33 172 aa15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 A0A0J9YY99 117 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 TSPAN13O95857 204 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 UBE2D3P61077 147 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 UBE2D2P62837 147 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 C9orf85Q96MD7 179 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZFHX3Q15911 3703 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 EDN2P20800 178 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 EMP1P54849 157 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 TCTEX1D4Q5JR98 221 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 CCL19Q99731 98 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNF876PQ49A33 203 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 SPTAN1Q13813 2472 aaKnown RBP14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 IGHV3-16A0A0C4DH30 117 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 MSMBP08118 114 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 LYRM7Q5U5X0 104 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 SYT8Q8NBV8 401 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 GNLYP22749 145 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 WFDC12Q8WWY7 111 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 PSMB2P49721 201 aa14.97□□□□□ -0.01
SYNGAP1-227ENST00000638142 TMEM170BQ5T4T1 132 aa14.97□□□□□ -0.01
SYNGAP1-227ENST00000638142 LOC107984156A0A0G2JMH3 177 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 FAM74A4Q5TZK3 123 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 ARL17AQ8IVW1 177 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNRF2Q8NHG8 242 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 PSMB8P28062 276 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 RHOHQ15669 191 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NDUFA11Q86Y39 141 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 SLC25A29Q8N8R3 303 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 DEFB104AQ8WTQ1 72 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV4-30-2A0A087WSY4 118 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 A0A0J9YX75 114 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF688P0C7X2 276 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 TSPEAR-AS2P59090 65 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NSUN5P1Q3KNT7 163 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NFE4Q86UQ8 179 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 CDIP1Q9H305 208 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 M0QY20 66 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 SNRPD3P62318 126 aaKnown RBP14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 USP24Q9UPU5 2620 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV3-30P01768 117 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV3-30-5P0DP03 117 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF56Q15929 161 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 MDFICQ9P1T7 246 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF256Q9Y2P7 627 aaPredicted RBP14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ATP5J2P56134 94 aa14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 CKS1BP61024 79 aa14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRPT1Q86TN4 253 aaKnown RBP14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRBV20-1A0A075B6N2 111 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 J3QQQ9 107 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 TMEM95Q3KNT9 176 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 Q8N1Y9 231 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 AMELXQ99217 191 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 PPDPFLQ8WWR9 84 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 PRORYQ9H606 182 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRAV12-2A0A075B6T6 113 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV1OR15-1A0A075B7D0 117 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 LGALS3P17931 250 aaKnown RBP14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 TMEM89A2RUT3 159 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 K7EQG2 157 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 SFTA2Q6UW10 78 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 TEN1Q86WV5 123 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 SBSPONQ8IVN8 264 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 CFC1BP0CG36 223 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 CFC1P0CG37 223 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF418Q8TF45 676 aaPredicted RBP14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 B4DSR2 109 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGKV3-20P01619 116 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 VCX2Q9H322 139 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 AVPP01185 164 aa14.89□□□□□ -0.03
SYNGAP1-227ENST00000638142 C10orf126Q8N4M7 172 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms