RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 A0A1W2PRE2 83 aa12.67□□□□□ -0.38
CLN3-262ENST00000637699 S100A4P26447 101 aaKnown RBP12.67□□□□□ -0.38
CLN3-262ENST00000637699 FLI1Q01543 452 aaPredicted RBP12.67□□□□□ -0.38
CLN3-262ENST00000637699 AKR1C8PQ5T2L2 129 aa12.67□□□□□ -0.38
CLN3-262ENST00000637699 LINC00479Q96M42 142 aa12.67□□□□□ -0.38
CLN3-262ENST00000637699 UBE2G2P60604 165 aa12.66□□□□□ -0.38
CLN3-262ENST00000637699 NIT1Q86X76 327 aa12.66□□□□□ -0.38
CLN3-262ENST00000637699 OR11H4Q8NGC9 324 aa12.66□□□□□ -0.38
CLN3-262ENST00000637699 UBE2WQ96B02 151 aa12.66□□□□□ -0.38
CLN3-262ENST00000637699 TRAV34A0A0B4J273 112 aa12.65□□□□□ -0.38
CLN3-262ENST00000637699 IGKV3D-20A0A0C4DH25 116 aa12.65□□□□□ -0.38
CLN3-262ENST00000637699 IGLV2-8P01709 118 aa12.65□□□□□ -0.38
CLN3-262ENST00000637699 FAM74A7A6NL05 159 aa12.64□□□□□ -0.39
CLN3-262ENST00000637699 SEC11BP0C7V7 166 aa12.64□□□□□ -0.39
CLN3-262ENST00000637699 KCNRGQ8N5I3 272 aa12.64□□□□□ -0.39
CLN3-262ENST00000637699 IFNA7P01567 189 aa12.63□□□□□ -0.39
CLN3-262ENST00000637699 ASIPP42127 132 aa12.63□□□□□ -0.39
CLN3-262ENST00000637699 FHITP49789 147 aa12.63□□□□□ -0.39
CLN3-262ENST00000637699 PIK3CD-AS1Q5SR53 167 aa12.63□□□□□ -0.39
CLN3-262ENST00000637699 UFSP1Q6NVU6 142 aa12.63□□□□□ -0.39
CLN3-262ENST00000637699 A0A087WX48 190 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 MAP1LC3B2A6NCE7 125 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 ZNF345Q14585 488 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 SAPCD1Q5SSQ6 148 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 DMRTA1Q5VZB9 504 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 Q6ZNX1 250 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 MAP1LC3BQ9GZQ8 125 aa12.62□□□□□ -0.39
CLN3-262ENST00000637699 HMSDA8MTL9 139 aa12.61□□□□□ -0.39
CLN3-262ENST00000637699 RPL37AP61513 92 aaKnown RBP12.61□□□□□ -0.39
CLN3-262ENST00000637699 H3BVH4 76 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 PEX7O00628 323 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 ELOBQ15370 118 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 FAM74A4Q5TZK3 123 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 IL36BQ9NZH7 164 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 ARL2-SNX15V9GYD0 113 aa12.6□□□□□ -0.39
CLN3-262ENST00000637699 FABP5P3A8MUU1 101 aa12.59□□□□□ -0.39
CLN3-262ENST00000637699 KCNIP4Q6PIL6 250 aa12.59□□□□□ -0.39
CLN3-262ENST00000637699 NKX6-2Q9C056 277 aaPredicted RBP12.59□□□□□ -0.39
CLN3-262ENST00000637699 A0A087WWL8 130 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 A0A0D9SG52 128 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 B4DEV8 164 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 RHODO00212 210 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 HNRNPA3P51991 378 aaKnown RBP12.58□□□□□ -0.4
CLN3-262ENST00000637699 ATRAIDQ6UW56 229 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 Q86TA4 180 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 HIST1H2BAQ96A08 127 aa12.58□□□□□ -0.4
CLN3-262ENST00000637699 ARMS2P0C7Q2 107 aa12.57□□□□□ -0.4
CLN3-262ENST00000637699 Q0VG73 95 aa12.57□□□□□ -0.4
CLN3-262ENST00000637699 C14orf177Q52M58 125 aa12.57□□□□□ -0.4
CLN3-262ENST00000637699 CHCHD7Q9BUK0 85 aa12.57□□□□□ -0.4
CLN3-262ENST00000637699 C1orf43Q9BWL3 253 aa12.57□□□□□ -0.4
CLN3-262ENST00000637699 ZNF471Q9BX82 626 aaPredicted RBP12.57□□□□□ -0.4
CLN3-262ENST00000637699 A0A1B0GVG6 124 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 GRIFINA4D1Z8 144 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 TMEM262E9PQX1 116 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 M0R036 132 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 BCL2L11O43521 198 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 CRIP1P50238 77 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 CST9LP1Q5W188 147 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 STOML3Q8TAV4 291 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 FAM213BQ8TBF2 198 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 MBD3L1Q8WWY6 194 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 DAZAP1Q96EP5 407 aaKnown RBP12.56□□□□□ -0.4
CLN3-262ENST00000637699 ZC2HC1AQ96GY0 325 aa12.56□□□□□ -0.4
CLN3-262ENST00000637699 KANTRA0A1W2PQU2 76 aa12.55□□□□□ -0.4
CLN3-262ENST00000637699 TMUB2Q71RG4 321 aa12.55□□□□□ -0.4
CLN3-262ENST00000637699 SFT2D1Q8WV19 159 aa12.55□□□□□ -0.4
CLN3-262ENST00000637699 A0A1B0GV50 99 aa12.54□□□□□ -0.4
CLN3-262ENST00000637699 KRBOX1C9JBD0 128 aa12.54□□□□□ -0.4
CLN3-262ENST00000637699 PAGE4O60829 102 aa12.54□□□□□ -0.4
CLN3-262ENST00000637699 ENHOQ6UWT2 76 aa12.54□□□□□ -0.4
CLN3-262ENST00000637699 SFRP2Q96HF1 295 aa12.54□□□□□ -0.4
CLN3-262ENST00000637699 UMAD1C9J7I0 102 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 M0R381 172 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 RPL36AP83881 106 aaKnown RBP12.53□□□□□ -0.4
CLN3-262ENST00000637699 DNLZQ5SXM8 178 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 COX8CQ7Z4L0 72 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 RPL36ALQ969Q0 106 aaKnown RBP12.53□□□□□ -0.4
CLN3-262ENST00000637699 FMC1Q96HJ9 113 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 ZFP30Q9Y2G7 519 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 PHLDA3Q9Y5J5 127 aa12.53□□□□□ -0.4
CLN3-262ENST00000637699 USP17L23D6RBM5 183 aa12.52□□□□□ -0.41
CLN3-262ENST00000637699 CRPP02741 224 aa12.52□□□□□ -0.41
CLN3-262ENST00000637699 UBE2D3P61077 147 aa12.52□□□□□ -0.41
CLN3-262ENST00000637699 UBE2D2P62837 147 aa12.52□□□□□ -0.41
CLN3-262ENST00000637699 C15orf54Q8N8G6 183 aa12.52□□□□□ -0.41
CLN3-262ENST00000637699 TRBV7-3A0A075B6L6 115 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 TMSB15BA0A087X1C1 80 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 TRBV10-1A0A0K0K1A3 114 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 TRBV6-1A0A0K0K1D8 114 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 SH2D1AO60880 128 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 HLA-DQA1P01909 254 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 UBE2G1P62253 170 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 TCEAL7Q9BRU2 100 aa12.51□□□□□ -0.41
CLN3-262ENST00000637699 TRBV6-8A0A0A6YYG3 113 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 PFDN1O60925 122 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 LTAP01374 205 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 ANGP03950 147 aaKnown RBP12.5□□□□□ -0.41
CLN3-262ENST00000637699 PRSS1P07477 247 aa12.5□□□□□ -0.41
CLN3-262ENST00000637699 TPT1P13693 172 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms