RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 HERC2O95714 4834 aa13.21□□□□□ -0.29
CLN3-260ENST00000637578 LYPD5Q6UWN5 251 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 OR4C5Q8NGB2 326 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 PTH2Q96A98 100 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 PHLDA3Q9Y5J5 127 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 XKRY2A2RUG3 117 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 K7EQD1 137 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 SNAI2O43623 268 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 GATCO43716 136 aaKnown RBP13.2□□□□□ -0.3
CLN3-260ENST00000637578 BTF3P20290 206 aaKnown RBP13.2□□□□□ -0.3
CLN3-260ENST00000637578 NEGR1Q7Z3B1 354 aa13.2□□□□□ -0.3
CLN3-260ENST00000637578 SSBP4Q9BWG4 385 aaPredicted RBP13.2□□□□□ -0.3
CLN3-260ENST00000637578 KIAA1109Q2LD37 5005 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 DYNC1H1Q14204 4646 aaKnown RBP13.19□□□□□ -0.3
CLN3-260ENST00000637578 OR5AL1P0C617 328 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 IGLC6P0CF74 106 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 TNP2Q05952 138 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 DMRTA1Q5VZB9 504 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 FER1L6-AS1Q8NA97 138 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 OR10AG1Q8NH19 301 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 OSTCQ9NRP0 149 aa13.19□□□□□ -0.3
CLN3-260ENST00000637578 DNAH11Q96DT5 4516 aa13.18□□□□□ -0.3
CLN3-260ENST00000637578 MUC21A0A0G2JKD1 596 aa13.18□□□□□ -0.3
CLN3-260ENST00000637578 MUC21A0A140T8X8 626 aa13.18□□□□□ -0.3
CLN3-260ENST00000637578 M0R381 172 aa13.18□□□□□ -0.3
CLN3-260ENST00000637578 TPPP3Q9BW30 176 aa13.18□□□□□ -0.3
CLN3-260ENST00000637578 TMEM218A2RU14 115 aa13.17□□□□□ -0.3
CLN3-260ENST00000637578 PIK3CD-AS1Q5SR53 167 aa13.17□□□□□ -0.3
CLN3-260ENST00000637578 SYT8Q8NBV8 401 aa13.17□□□□□ -0.3
CLN3-260ENST00000637578 SFRP2Q96HF1 295 aa13.17□□□□□ -0.3
CLN3-260ENST00000637578 SIVA1O15304 175 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 CIDEAO60543 219 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 NXPH4O95158 308 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 GYPEP15421 78 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 GATA1P15976 413 aaPredicted RBP13.16□□□□□ -0.3
CLN3-260ENST00000637578 ADCYAP1P18509 176 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 CFAP126Q5VTH2 177 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 ZFP82Q8N141 532 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 C15orf54Q8N8G6 183 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 JPT2Q9H910 190 aa13.16□□□□□ -0.3
CLN3-260ENST00000637578 RS1O15537 224 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 SRIP30626 198 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 CT83Q5H943 113 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 SSTP61278 116 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 SPANXN1Q5VSR9 72 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 GTSF1Q8WW33 167 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 V9GYV3 84 aa13.15□□□□□ -0.3
CLN3-260ENST00000637578 A8MWL6 223 aa13.14□□□□□ -0.31
CLN3-260ENST00000637578 LYZL1Q6UWQ5 148 aa13.14□□□□□ -0.31
CLN3-260ENST00000637578 OR10G8Q8NGN5 311 aa13.14□□□□□ -0.31
CLN3-260ENST00000637578 A8MWV9 139 aa13.13□□□□□ -0.31
CLN3-260ENST00000637578 F8W036 122 aa13.13□□□□□ -0.31
CLN3-260ENST00000637578 CTRLP40313 264 aa13.13□□□□□ -0.31
CLN3-260ENST00000637578 SAMD10Q9BYL1 202 aa13.13□□□□□ -0.31
CLN3-260ENST00000637578 IGHV3-73A0A0B4J1V6 119 aa13.12□□□□□ -0.31
CLN3-260ENST00000637578 LOC100131303A0A0U1RQF7 123 aa13.12□□□□□ -0.31
CLN3-260ENST00000637578 F2Z2F3 143 aa13.12□□□□□ -0.31
CLN3-260ENST00000637578 PNRC1Q12796 327 aaPredicted RBP13.12□□□□□ -0.31
CLN3-260ENST00000637578 SH2D6Q7Z4S9 175 aa13.12□□□□□ -0.31
CLN3-260ENST00000637578 TSKUQ8WUA8 353 aa13.12□□□□□ -0.31
CLN3-260ENST00000637578 SLC25A29Q8N8R3 303 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 A0A087WWL8 130 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 TRBV6-4A0A1B0GX49 114 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 TIRAPP58753 221 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 UFSP1Q6NVU6 142 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 Q6ZRN7 208 aaPredicted RBP13.11□□□□□ -0.31
CLN3-260ENST00000637578 SEC11CQ9BY50 192 aa13.11□□□□□ -0.31
CLN3-260ENST00000637578 LINC00315P59091 139 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 CACNG7P62955 275 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 FAM74A4Q5TZK3 123 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 CNFNQ9BYD5 112 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 GFRA4Q9GZZ7 299 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 MSRB1Q9NZV6 116 aa13.1□□□□□ -0.31
CLN3-260ENST00000637578 CRYGDP07320 174 aa13.09□□□□□ -0.31
CLN3-260ENST00000637578 FOXA3P55318 350 aaPredicted RBP13.09□□□□□ -0.31
CLN3-260ENST00000637578 ZFP2Q6ZN57 461 aa13.09□□□□□ -0.31
CLN3-260ENST00000637578 PGLYRP4Q96LB8 373 aa13.09□□□□□ -0.31
CLN3-260ENST00000637578 HIGD1CA8MV81 97 aa13.08□□□□□ -0.32
CLN3-260ENST00000637578 K7EP13 123 aa13.08□□□□□ -0.32
CLN3-260ENST00000637578 FAM231BA6NCW3 169 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 RHODO00212 210 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 DNAH10OSP0CZ25 163 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 NTF3P20783 257 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 RHOHQ15669 191 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 WDR73Q6P4I2 378 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 WFDC10BQ8IUB3 73 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 AP1S3Q96PC3 154 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 PRADC1Q9BSG0 188 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 C10orf91Q5T1B1 145 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 Q6ZSN1 163 aa13.07□□□□□ -0.32
CLN3-260ENST00000637578 C14orf178Q8N769 122 aaPredicted RBP13.07□□□□□ -0.32
CLN3-260ENST00000637578 CARHSP1Q9Y2V2 147 aaKnown RBP13.06□□□□□ -0.32
CLN3-260ENST00000637578 TRAV9-2A0A087WT02 112 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 SMIM27A0A1W2PRY6 76 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 PPP1R2P9O14990 202 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 MT-ND4LP03901 98 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 TWIST1Q15672 202 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 NUP35Q8NFH5 326 aa13.05□□□□□ -0.32
CLN3-260ENST00000637578 NAT8BQ9UHF3 227 aa13.04□□□□□ -0.32
CLN3-260ENST00000637578 KIF25-AS1Q9Y6Z4 181 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms