RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KIF25-AS1Q9Y6Z4 181 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 CST7O76096 145 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 SNAPINO95295 136 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 ATP6V0CP27449 155 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 CIRBPQ14011 172 aaKnown RBP9.19□□□□□ -0.94
CLN3-249ENST00000636685 DGAT2L7PQ6IED9 249 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 WDR73Q6P4I2 378 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 CYB561D1Q8N8Q1 229 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 Q9UF83 564 aa9.19□□□□□ -0.94
CLN3-249ENST00000636685 A0A087WWC5 75 aa9.18□□□□□ -0.94
CLN3-249ENST00000636685 CIDEAO60543 219 aa9.18□□□□□ -0.94
CLN3-249ENST00000636685 MGST1P10620 155 aaKnown RBP9.18□□□□□ -0.94
CLN3-249ENST00000636685 DPH3Q96FX2 82 aa9.18□□□□□ -0.94
CLN3-249ENST00000636685 C1orf43Q9BWL3 253 aa9.18□□□□□ -0.94
CLN3-249ENST00000636685 NKX6-2Q9C056 277 aaPredicted RBP9.18□□□□□ -0.94
CLN3-249ENST00000636685 SLC39A9Q9NUM3 307 aa9.18□□□□□ -0.94
CLN3-249ENST00000636685 A0A087WYN8 130 aa9.17□□□□□ -0.94
CLN3-249ENST00000636685 AKR1C8PQ5T2L2 129 aa9.17□□□□□ -0.94
CLN3-249ENST00000636685 PSMG3Q9BT73 122 aaPredicted RBP9.17□□□□□ -0.94
CLN3-249ENST00000636685 SLC25A2Q9BXI2 301 aa9.17□□□□□ -0.94
CLN3-249ENST00000636685 TMA7Q9Y2S6 64 aaKnown RBP9.17□□□□□ -0.94
CLN3-249ENST00000636685 A0A0U1RQV1 116 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 HLA-DQA1P01909 254 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 H2AFB1P0C5Y9 115 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 NBEAP1P0C6P0 100 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 CHTF8P0CG12 524 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 SERF2P84101 59 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 Q0VG73 95 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 LCE2AQ5TA79 106 aaPredicted RBP9.16□□□□□ -0.94
CLN3-249ENST00000636685 FAM213BQ8TBF2 198 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 SAMD10Q9BYL1 202 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 SDF2L1Q9HCN8 221 aa9.16□□□□□ -0.94
CLN3-249ENST00000636685 A0A087WX48 190 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 RBAKDNA6NC62 111 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 RPL29P47914 159 aaKnown RBP9.15□□□□□ -0.94
CLN3-249ENST00000636685 RPL19P84098 196 aaKnown RBP9.15□□□□□ -0.94
CLN3-249ENST00000636685 SRSF3P84103 164 aaKnown RBP9.15□□□□□ -0.94
CLN3-249ENST00000636685 ELOBQ15370 118 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 GCSAMLQ5JQS6 135 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 ENHOQ6UWT2 76 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 OR10G9Q8NGN4 311 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 FAM167A-AS1Q96KT0 104 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 EIF5A2Q9GZV4 153 aaKnown RBP9.15□□□□□ -0.94
CLN3-249ENST00000636685 WDR83OSQ9Y284 106 aa9.15□□□□□ -0.94
CLN3-249ENST00000636685 TRAV1-1A0A0B4J248 108 aa9.14□□□□□ -0.95
CLN3-249ENST00000636685 DIRC3C9JPN6 131 aa9.14□□□□□ -0.95
CLN3-249ENST00000636685 ZNF506Q5JVG8 444 aa9.14□□□□□ -0.95
CLN3-249ENST00000636685 LENEPQ9Y5L5 61 aa9.14□□□□□ -0.95
CLN3-249ENST00000636685 TRAV21A0A0B4J279 112 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 PGPEP1LA6NFU8 196 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 MBP02144 154 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 CSN1S1P47710 185 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 PRR3P79522 188 aaKnown RBP9.13□□□□□ -0.95
CLN3-249ENST00000636685 DMRTA1Q5VZB9 504 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 MIR17HGQ75NE6 70 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.13□□□□□ -0.95
CLN3-249ENST00000636685 C7orf33Q8WU49 177 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 MBD3L1Q8WWY6 194 aa9.13□□□□□ -0.95
CLN3-249ENST00000636685 F6UZH7 168 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 ADCYAP1P18509 176 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 REG3GQ6UW15 175 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 C14orf178Q8N769 122 aaPredicted RBP9.12□□□□□ -0.95
CLN3-249ENST00000636685 FXYD5Q96DB9 178 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 RNF185Q96GF1 192 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 KCNS1Q96KK3 526 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 CHCHD7Q9BUK0 85 aa9.12□□□□□ -0.95
CLN3-249ENST00000636685 WDR61Q9GZS3 305 aaKnown RBP9.12□□□□□ -0.95
CLN3-249ENST00000636685 UBE2L5PA0A1B0GUS4 154 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 PGPA6NDG6 321 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 FHITP49789 147 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 RANP62826 216 aaKnown RBP9.11□□□□□ -0.95
CLN3-249ENST00000636685 KCNIP4Q6PIL6 250 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 CLRN3Q8NCR9 226 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 SPACA4Q8TDM5 124 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 SFT2D1Q8WV19 159 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 PARLQ9H300 379 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 PLAC8Q9NZF1 115 aa9.11□□□□□ -0.95
CLN3-249ENST00000636685 C9JQL5 133 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 C17orf112F2Z3M2 114 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 CRPP02741 224 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 KHDC3LQ587J8 217 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 C15orf54Q8N8G6 183 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 LINC00479Q96M42 142 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 C9orf85Q96MD7 179 aa9.1□□□□□ -0.95
CLN3-249ENST00000636685 LOC105371267A0A1B0GV96 52 aa9.09□□□□□ -0.95
CLN3-249ENST00000636685 NDUFS6O75380 124 aaKnown RBP9.09□□□□□ -0.95
CLN3-249ENST00000636685 TAGLN2P37802 199 aaKnown RBP9.09□□□□□ -0.95
CLN3-249ENST00000636685 FGF8P55075 233 aaPredicted RBP9.09□□□□□ -0.95
CLN3-249ENST00000636685 GTSF1Q8WW33 167 aa9.09□□□□□ -0.95
CLN3-249ENST00000636685 TVP23CQ96ET8 276 aa9.09□□□□□ -0.95
CLN3-249ENST00000636685 SMCO4Q9NRQ5 59 aa9.09□□□□□ -0.95
CLN3-249ENST00000636685 C11orf21Q9P2W6 132 aa9.09□□□□□ -0.95
CLN3-249ENST00000636685 FAM74A7A6NL05 159 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 TMEM262E9PQX1 116 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 IFNA1P01562 189 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 FGF7P21781 194 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 CCL20P78556 96 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 FAM74A3Q4VXF1 159 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 SPINK6Q6UWN8 80 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 ZFP2Q6ZN57 461 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms