RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-215	ENST00000636674	PIMREG	Q9BSJ6	248 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	TRBV6-5	A0A0K0K1A5	114 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	IGHV4-38-2	P0DP08	117 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	SCGB1A1	P11684	91 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	HERVK_113	P61574	105 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	GAGE13	Q4V321	117 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	TP53TG1	Q9Y2A0	90 aa		10.89	□□□□□ -0.67
CLN6-215	ENST00000636674	IGHV4-61	A0A0C4DH41	118 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	C11orf86	A6NJI1	115 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674		H3BUX3	64 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	C19orf84	I3L1E1	186 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	VCY	O14598	125 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	ID1	P41134	155 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	SCGB2A2	Q13296	93 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	PMVK	Q15126	192 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	SUMO4	Q6EEV6	95 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	FAM159A	Q6UWV7	190 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	DCANP1	Q8TF63	244 aa		10.88	□□□□□ -0.67
CLN6-215	ENST00000636674	LGALS9	O00182	355 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	LY6E	Q16553	131 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	LCNL1	Q6ZST4	164 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	PLEKHB2	Q96CS7	222 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	SPATA25	Q9BR10	227 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	NBPF19	A0A087WUL8	3843 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	TRBV27	A0A0K0K1C4	114 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	NDUFS8	O00217	210 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	CD300E	Q496F6	205 aa	Predicted RBP	10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	AMTN	Q6UX39	209 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	SCGB1D4	Q6XE38	83 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	C10orf105	Q8TEF2	133 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	KIR2DL4	Q99706	377 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	PGPEP1	Q9NXJ5	209 aa		10.87	□□□□□ -0.67
CLN6-215	ENST00000636674	C9orf85	Q96MD7	179 aa		10.86	□□□□□ -0.67
CLN6-215	ENST00000636674	CD7	P09564	240 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	ETDB	Q3ZM63	59 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	IGKV3-7	A0A075B6H7	116 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674		A0A0J9YY99	117 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	CIDEA	O60543	219 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	BLCAP	P62952	87 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	ATP6V0E2	Q8NHE4	81 aa		10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	SPAG8	Q99932	426 aa	Predicted RBP	10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.85	□□□□□ -0.67
CLN6-215	ENST00000636674	UNC79	Q9P2D8	2635 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	GAGE12H	A6NDE8	117 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	SDHAF1	A6NFY7	115 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	ZNF876P	Q49A33	203 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	SH2D6	Q7Z4S9	175 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	DLX4	Q92988	240 aa	Predicted RBP	10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	SIGMAR1	Q99720	223 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	MRPL16	Q9NX20	251 aa	Known RBP	10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	UBE2D3	P61077	147 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	UBE2D2	P62837	147 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	CFAP126	Q5VTH2	177 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	HIST2H2BC	Q6DN03	193 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674		Q6ZS46	218 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	JPT2	Q9H910	190 aa		10.84	□□□□□ -0.67
CLN6-215	ENST00000636674	SVEP1	Q4LDE5	3571 aa		10.83	□□□□□ -0.68
CLN6-215	ENST00000636674	IGHV3-16	A0A0C4DH30	117 aa		10.83	□□□□□ -0.68
CLN6-215	ENST00000636674	TSPAN13	O95857	204 aa		10.83	□□□□□ -0.68
CLN6-215	ENST00000636674	NSUN5P1	Q3KNT7	163 aa		10.83	□□□□□ -0.68
CLN6-215	ENST00000636674	LYRM7	Q5U5X0	104 aa		10.83	□□□□□ -0.68
CLN6-215	ENST00000636674	RPL39	P62891	51 aa	Known RBP	10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	RHOH	Q15669	191 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	NFE4	Q86UQ8	179 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	KLHL30-AS1	Q8NEE0	82 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674		A0A087WWL8	130 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	AZU1	P20160	251 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	EDN2	P20800	178 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	SYT8	Q8NBV8	401 aa		10.82	□□□□□ -0.68
CLN6-215	ENST00000636674	CENPE	Q02224	2701 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	TRAV12-3	A0A0B4J271	114 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	MSMB	P08118	114 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	SRD5A1	P18405	259 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	PSMB8	P28062	276 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	NDUFA11	Q86Y39	141 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	SLC25A29	Q8N8R3	303 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674	AMELX	Q99217	191 aa		10.81	□□□□□ -0.68
CLN6-215	ENST00000636674		A0A0J9YX75	114 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	TMEM89	A2RUT3	159 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674		M0QY20	66 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	IGHV3-30	P01768	117 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	IGHV3-30-5	P0DP03	117 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	TSPEAR-AS2	P59090	65 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	CLEC2A	Q6UVW9	174 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	ZNRF2	Q8NHG8	242 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	CCL19	Q99731	98 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	C1QTNF4	Q9BXJ3	329 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	AKAP6	Q13023	2319 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674		F5H697	171 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	RNF152	Q8N8N0	203 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	GTSF1L	Q9H1H1	148 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	CRYBG3	Q68DQ2	2970 aa		10.8	□□□□□ -0.68
CLN6-215	ENST00000636674	SMCP	P49901	116 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	APOM	O95445	188 aa		10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	EMP1	P54849	157 aa		10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	TRPT1	Q86TN4	253 aa	Known RBP	10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	MTURN	Q8N3F0	131 aa		10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	ZNF256	Q9Y2P7	627 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-215	ENST00000636674	NAV2	Q8IVL1	2488 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms