RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 CCL18P55774 89 aa12.59□□□□□ -0.39
CLN3-243ENST00000635973 ADIRFQ15847 76 aa12.59□□□□□ -0.39
CLN3-243ENST00000635973 FAM231DQ6ZW35 169 aa12.59□□□□□ -0.39
CLN3-243ENST00000635973 SSBP4Q9BWG4 385 aaPredicted RBP12.59□□□□□ -0.39
CLN3-243ENST00000635973 A0A087WWL8 130 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 A0A096LPF7 62 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 A0A1W2PPQ1 181 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 RTL8CO15255 209 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 IGLC6P0CF74 106 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 GYPEP15421 78 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 ZFP2Q6ZN57 461 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 SFRP2Q96HF1 295 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 PRADC1Q9BSG0 188 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 SAMD10Q9BYL1 202 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 NACAE9PAV3 2078 aa12.58□□□□□ -0.4
CLN3-243ENST00000635973 NXPH4O95158 308 aa12.57□□□□□ -0.4
CLN3-243ENST00000635973 SRIP30626 198 aa12.57□□□□□ -0.4
CLN3-243ENST00000635973 FAM3BP58499 235 aaPredicted RBP12.57□□□□□ -0.4
CLN3-243ENST00000635973 CACNG7P62955 275 aa12.57□□□□□ -0.4
CLN3-243ENST00000635973 RHOHQ15669 191 aa12.57□□□□□ -0.4
CLN3-243ENST00000635973 MRPL23Q16540 153 aaKnown RBP12.57□□□□□ -0.4
CLN3-243ENST00000635973 C15orf54Q8N8G6 183 aa12.57□□□□□ -0.4
CLN3-243ENST00000635973 F2Z2F3 143 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 K7EQD1 137 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 SMIM17P0DL12 118 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 RPL23P62829 140 aaKnown RBP12.56□□□□□ -0.4
CLN3-243ENST00000635973 LYZL1Q6UWQ5 148 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 SLC25A29Q8N8R3 303 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 AP1S3Q96PC3 154 aa12.56□□□□□ -0.4
CLN3-243ENST00000635973 FAT2Q9NYQ8 4349 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 A0A1B0GVY2 172 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 TRBV6-4A0A1B0GX49 114 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 A8MWL6 223 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 CTRLP40313 264 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 C1orf134Q5TEV5 83 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 Q6ZR54 194 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 ISOC2Q96AB3 205 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 OSTCQ9NRP0 149 aa12.55□□□□□ -0.4
CLN3-243ENST00000635973 DNAH2Q9P225 4427 aa12.54□□□□□ -0.4
CLN3-243ENST00000635973 LOC100131303A0A0U1RQF7 123 aa12.54□□□□□ -0.4
CLN3-243ENST00000635973 ZNF56Q15929 161 aa12.54□□□□□ -0.4
CLN3-243ENST00000635973 CT83Q5H943 113 aa12.54□□□□□ -0.4
CLN3-243ENST00000635973 NEGR1Q7Z3B1 354 aa12.54□□□□□ -0.4
CLN3-243ENST00000635973 CRYGDP07320 174 aa12.53□□□□□ -0.4
CLN3-243ENST00000635973 UFSP1Q6NVU6 142 aa12.53□□□□□ -0.4
CLN3-243ENST00000635973 Q6ZSN1 163 aa12.52□□□□□ -0.41
CLN3-243ENST00000635973 C14orf178Q8N769 122 aaPredicted RBP12.52□□□□□ -0.41
CLN3-243ENST00000635973 OR10G8Q8NGN5 311 aa12.52□□□□□ -0.41
CLN3-243ENST00000635973 GTSF1Q8WW33 167 aa12.52□□□□□ -0.41
CLN3-243ENST00000635973 BORCS7Q96B45 105 aa12.52□□□□□ -0.41
CLN3-243ENST00000635973 LINC00588Q9Y4M8 146 aa12.52□□□□□ -0.41
CLN3-243ENST00000635973 F5H697 171 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 TRGC1P0CF51 173 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 TWIST1Q15672 202 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 ESRGQ1W209 222 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 UQCC3Q6UW78 93 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 SH2D6Q7Z4S9 175 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 COMMD7Q86VX2 200 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 TSKUQ8WUA8 353 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 PGLYRP4Q96LB8 373 aa12.51□□□□□ -0.41
CLN3-243ENST00000635973 MGPP08493 103 aa12.5□□□□□ -0.41
CLN3-243ENST00000635973 NTF3P20783 257 aa12.5□□□□□ -0.41
CLN3-243ENST00000635973 MSRB1Q9NZV6 116 aa12.5□□□□□ -0.41
CLN3-243ENST00000635973 DNAH17Q9UFH2 4485 aa12.5□□□□□ -0.41
CLN3-243ENST00000635973 GAGE12JA6NER3 117 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 RAB4BP61018 213 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 GAGE1Q13065 139 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 GAGE4Q13068 117 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 GAGE5Q13069 117 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 GAGE13Q4V321 117 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 WDR73Q6P4I2 378 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 V9GYV3 84 aa12.49□□□□□ -0.41
CLN3-243ENST00000635973 HIGD1CA8MV81 97 aa12.48□□□□□ -0.41
CLN3-243ENST00000635973 SMIM15Q7Z3B0 74 aa12.48□□□□□ -0.41
CLN3-243ENST00000635973 CNFNQ9BYD5 112 aa12.48□□□□□ -0.41
CLN3-243ENST00000635973 GFRA4Q9GZZ7 299 aa12.48□□□□□ -0.41
CLN3-243ENST00000635973 MRPS16Q9Y3D3 137 aaKnown RBP12.48□□□□□ -0.41
CLN3-243ENST00000635973 PKHD1P08F94 4074 aa12.47□□□□□ -0.41
CLN3-243ENST00000635973 NBDYA0A0U1RRE5 68 aa12.47□□□□□ -0.41
CLN3-243ENST00000635973 FAM231BA6NCW3 169 aa12.47□□□□□ -0.41
CLN3-243ENST00000635973 PNRC1Q12796 327 aaPredicted RBP12.47□□□□□ -0.41
CLN3-243ENST00000635973 LYPD5Q6UWN5 251 aa12.47□□□□□ -0.41
CLN3-243ENST00000635973 ZNRF2Q8NHG8 242 aa12.47□□□□□ -0.41
CLN3-243ENST00000635973 TRBV10-1A0A0K0K1A3 114 aa12.46□□□□□ -0.41
CLN3-243ENST00000635973 EVI2AP22794 236 aa12.46□□□□□ -0.41
CLN3-243ENST00000635973 DPH3P1Q9H4G8 78 aa12.46□□□□□ -0.41
CLN3-243ENST00000635973 DNAH11Q96DT5 4516 aa12.46□□□□□ -0.42
CLN3-243ENST00000635973 A0A1B0GUT8 65 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 F8W036 122 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 RPL36AP83881 106 aaKnown RBP12.45□□□□□ -0.42
CLN3-243ENST00000635973 C6orf223Q8N319 242 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 ATP6V0E2Q8NHE4 81 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 RPL36ALQ969Q0 106 aaKnown RBP12.45□□□□□ -0.42
CLN3-243ENST00000635973 UPK3BQ9BT76 320 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 NAT8BQ9UHF3 227 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 KIF25-AS1Q9Y6Z4 181 aa12.45□□□□□ -0.42
CLN3-243ENST00000635973 TMEM218A2RU14 115 aa12.44□□□□□ -0.42
CLN3-243ENST00000635973 FOXA3P55318 350 aaPredicted RBP12.44□□□□□ -0.42
CLN3-243ENST00000635973 RYR1P21817 5038 aa12.44□□□□□ -0.42
CLN3-243ENST00000635973 DYNC1H1Q14204 4646 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms