RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 ALG5Q9Y673 324 aa15.55■□□□□ 0.08
CPSF1-214ENST00000622776 KRBOX1C9JBD0 128 aa15.54■□□□□ 0.08
CPSF1-214ENST00000622776 M0R036 132 aa15.54■□□□□ 0.08
CPSF1-214ENST00000622776 PEX7O00628 323 aa15.54■□□□□ 0.08
CPSF1-214ENST00000622776 CRIP1P50238 77 aa15.54■□□□□ 0.08
CPSF1-214ENST00000622776 A0A087WWL8 130 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 A0A087WX48 190 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 GRIFINA4D1Z8 144 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 UBE2G2P60604 165 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 ELOBQ15370 118 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 CIRBP-AS1Q8TBR5 109 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 ZC2HC1AQ96GY0 325 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 SFRP2Q96HF1 295 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 CHCHD7Q9BUK0 85 aa15.53■□□□□ 0.08
CPSF1-214ENST00000622776 ZNF726P1Q15940 193 aa15.52■□□□□ 0.08
CPSF1-214ENST00000622776 SH2D1AO60880 128 aa15.51■□□□□ 0.07
CPSF1-214ENST00000622776 SERTAD4-AS1Q5TG53 156 aa15.51■□□□□ 0.07
CPSF1-214ENST00000622776 ATRAIDQ6UW56 229 aa15.51■□□□□ 0.07
CPSF1-214ENST00000622776 HIST1H2BAQ96A08 127 aa15.51■□□□□ 0.07
CPSF1-214ENST00000622776 PHLDA3Q9Y5J5 127 aa15.51■□□□□ 0.07
CPSF1-214ENST00000622776 FAT3Q8TDW7 4589 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 CTXND1A0A1B0GTU2 59 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 A6NHS1 94 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 KCNIP4Q6PIL6 250 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 COX8CQ7Z4L0 72 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 ZFP30Q9Y2G7 519 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 HMCN2Q8NDA2 5059 aa15.5■□□□□ 0.07
CPSF1-214ENST00000622776 TRBV10-1A0A0K0K1A3 114 aa15.49■□□□□ 0.07
CPSF1-214ENST00000622776 FAM74A7A6NL05 159 aa15.49■□□□□ 0.07
CPSF1-214ENST00000622776 TPT1P13693 172 aaKnown RBP15.49■□□□□ 0.07
CPSF1-214ENST00000622776 Q5BKY6 102 aa15.49■□□□□ 0.07
CPSF1-214ENST00000622776 FAM162BQ5T6X4 162 aa15.49■□□□□ 0.07
CPSF1-214ENST00000622776 RPL7L1Q6DKI1 246 aaKnown RBP15.49■□□□□ 0.07
CPSF1-214ENST00000622776 NKX6-2Q9C056 277 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-214ENST00000622776 M0R381 172 aa15.48■□□□□ 0.07
CPSF1-214ENST00000622776 OXTP01178 125 aa15.48■□□□□ 0.07
CPSF1-214ENST00000622776 UBE2D3P61077 147 aa15.48■□□□□ 0.07
CPSF1-214ENST00000622776 UBE2D2P62837 147 aa15.48■□□□□ 0.07
CPSF1-214ENST00000622776 RPL36AP83881 106 aaKnown RBP15.48■□□□□ 0.07
CPSF1-214ENST00000622776 Q0VG73 95 aa15.48■□□□□ 0.07
CPSF1-214ENST00000622776 RPL36ALQ969Q0 106 aaKnown RBP15.48■□□□□ 0.07
CPSF1-214ENST00000622776 TMSB15BA0A087X1C1 80 aa15.47■□□□□ 0.07
CPSF1-214ENST00000622776 IGLV2-8P01709 118 aa15.47■□□□□ 0.07
CPSF1-214ENST00000622776 C14orf177Q52M58 125 aa15.47■□□□□ 0.07
CPSF1-214ENST00000622776 MED28Q9H204 178 aa15.47■□□□□ 0.07
CPSF1-214ENST00000622776 TRBV7-3A0A075B6L6 115 aa15.46■□□□□ 0.07
CPSF1-214ENST00000622776 BORCS7-ASMTA0A0B4J1R7 106 aa15.46■□□□□ 0.07
CPSF1-214ENST00000622776 LINC01559Q495D7 138 aa15.46■□□□□ 0.07
CPSF1-214ENST00000622776 ZFP82Q8N141 532 aa15.46■□□□□ 0.07
CPSF1-214ENST00000622776 INO80EQ8NBZ0 244 aaPredicted RBP15.46■□□□□ 0.07
CPSF1-214ENST00000622776 C1orf43Q9BWL3 253 aa15.46■□□□□ 0.07
CPSF1-214ENST00000622776 TMEM262E9PQX1 116 aa15.45■□□□□ 0.06
CPSF1-214ENST00000622776 ZNF674Q2M3X9 581 aa15.45■□□□□ 0.06
CPSF1-214ENST00000622776 FMC1Q96HJ9 113 aa15.45■□□□□ 0.06
CPSF1-214ENST00000622776 UBE2G1P62253 170 aa15.44■□□□□ 0.06
CPSF1-214ENST00000622776 ENHOQ6UWT2 76 aa15.44■□□□□ 0.06
CPSF1-214ENST00000622776 TRBV6-8A0A0A6YYG3 113 aa15.43■□□□□ 0.06
CPSF1-214ENST00000622776 OR10G8Q8NGN5 311 aa15.43■□□□□ 0.06
CPSF1-214ENST00000622776 TRBV6-1A0A0K0K1D8 114 aa15.42■□□□□ 0.06
CPSF1-214ENST00000622776 AKR1C8PQ5T2L2 129 aa15.42■□□□□ 0.06
CPSF1-214ENST00000622776 PKHD1L1Q86WI1 4243 aa15.41■□□□□ 0.06
CPSF1-214ENST00000622776 CRPP02741 224 aa15.41■□□□□ 0.06
CPSF1-214ENST00000622776 GIPP09681 153 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-214ENST00000622776 C15orf54Q8N8G6 183 aa15.41■□□□□ 0.06
CPSF1-214ENST00000622776 FXYD6-FXYD2A0A087WZ82 144 aa15.4■□□□□ 0.06
CPSF1-214ENST00000622776 LTAP01374 205 aa15.4■□□□□ 0.06
CPSF1-214ENST00000622776 MPV17L2Q567V2 206 aa15.4■□□□□ 0.06
CPSF1-214ENST00000622776 MAP1LC3B2A6NCE7 125 aa15.39■□□□□ 0.05
CPSF1-214ENST00000622776 RAB4BP61018 213 aa15.39■□□□□ 0.05
CPSF1-214ENST00000622776 NEXN-AS1Q8NBZ9 246 aa15.39■□□□□ 0.05
CPSF1-214ENST00000622776 MAP1LC3BQ9GZQ8 125 aa15.39■□□□□ 0.05
CPSF1-214ENST00000622776 USP17L23D6RBM5 183 aa15.38■□□□□ 0.05
CPSF1-214ENST00000622776 ANGP03950 147 aaKnown RBP15.38■□□□□ 0.05
CPSF1-214ENST00000622776 FHITP49789 147 aa15.38■□□□□ 0.05
CPSF1-214ENST00000622776 RPL37AP61513 92 aaKnown RBP15.38■□□□□ 0.05
CPSF1-214ENST00000622776 TCEAL7Q9BRU2 100 aa15.38■□□□□ 0.05
CPSF1-214ENST00000622776 ZNF56Q15929 161 aa15.37■□□□□ 0.05
CPSF1-214ENST00000622776 CST9LP1Q5W188 147 aa15.37■□□□□ 0.05
CPSF1-214ENST00000622776 PRR27Q6MZM9 219 aa15.37■□□□□ 0.05
CPSF1-214ENST00000622776 PTTG1O95997 202 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 HLA-DQA1P01909 254 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 AKR1C3P42330 323 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 OR10AG1Q8NH19 301 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 CHCHD5Q9BSY4 110 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 PLA2G2DQ9UNK4 145 aa15.36■□□□□ 0.05
CPSF1-214ENST00000622776 PRSS1P07477 247 aa15.35■□□□□ 0.05
CPSF1-214ENST00000622776 MIAQ16674 131 aa15.35■□□□□ 0.05
CPSF1-214ENST00000622776 UBR4Q5T4S7 5183 aa15.35■□□□□ 0.05
CPSF1-214ENST00000622776 PKIAP61925 76 aa15.34■□□□□ 0.05
CPSF1-214ENST00000622776 RPL19P84098 196 aaKnown RBP15.34■□□□□ 0.05
CPSF1-214ENST00000622776 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-214ENST00000622776 ZNF471Q9BX82 626 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-214ENST00000622776 HNRNPA3P51991 378 aaKnown RBP15.33■□□□□ 0.04
CPSF1-214ENST00000622776 DGAT2L7PQ6IED9 249 aa15.33■□□□□ 0.04
CPSF1-214ENST00000622776 STOML3Q8TAV4 291 aa15.33■□□□□ 0.04
CPSF1-214ENST00000622776 CXCL1P09341 107 aa15.32■□□□□ 0.04
CPSF1-214ENST00000622776 C9orf163Q8N9P6 203 aa15.32■□□□□ 0.04
CPSF1-214ENST00000622776 DAZAP1Q96EP5 407 aaKnown RBP15.32■□□□□ 0.04
CPSF1-214ENST00000622776 NTM-AS1Q6ZSK4 140 aa15.31■□□□□ 0.04
CPSF1-214ENST00000622776 PRR34Q9NV39 138 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms