RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.43□□□□□ -1.06
PDPN-211ENST00000617617 ZFP2Q6ZN57 461 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 HIST1H2BHQ93079 126 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 HIST1H2BNQ99877 126 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 HIST1H2BMQ99879 126 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 ALKBH7Q9BT30 221 aaPredicted RBP8.43□□□□□ -1.06
PDPN-211ENST00000617617 K7EIL1 84 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 RAB4BP61018 213 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 OR10J3Q5JRS4 329 aa8.43□□□□□ -1.06
PDPN-211ENST00000617617 CRYGDP07320 174 aa8.42□□□□□ -1.06
PDPN-211ENST00000617617 ZNF876PQ49A33 203 aa8.42□□□□□ -1.06
PDPN-211ENST00000617617 MRPL51Q4U2R6 128 aaKnown RBP8.42□□□□□ -1.06
PDPN-211ENST00000617617 TIMM8BQ9Y5J9 83 aaPredicted RBP8.42□□□□□ -1.06
PDPN-211ENST00000617617 RHODO00212 210 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 EVI2AP22794 236 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 AMN1Q8IY45 258 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 Q8NAQ8 132 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 NOTCH3Q9UM47 2321 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 MUC21A0A0G2JKD1 596 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 MUC21A0A140T8X8 626 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 LYRM9A8MSI8 78 aa8.41□□□□□ -1.06
PDPN-211ENST00000617617 PPP1R17O96001 155 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 C21orf62-AS1Q17RA5 79 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 DEFB135Q30KP9 77 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 ORMDL3Q8N138 153 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 C11orf68Q9H3H3 251 aaKnown RBP8.4□□□□□ -1.06
PDPN-211ENST00000617617 IGHV3OR16-12A0A075B7B8 117 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 TRAV4A0A0B4J268 109 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 TEX48A0A1B0GUV7 120 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 LINC01546A6NGU7 62 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 PRM2P04554 102 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 CFAP126Q5VTH2 177 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 OR11H2Q8NH07 326 aa8.4□□□□□ -1.06
PDPN-211ENST00000617617 ESDP10768 282 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 RPL32P62910 135 aaKnown RBP8.39□□□□□ -1.07
PDPN-211ENST00000617617 TM2D3Q9BRN9 247 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 SMIM17P0DL12 118 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 HTN1P15515 57 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 C14orf178Q8N769 122 aaPredicted RBP8.39□□□□□ -1.07
PDPN-211ENST00000617617 ANKRD39Q53RE8 183 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 NRACQ8N912 160 aa8.39□□□□□ -1.07
PDPN-211ENST00000617617 SRIP30626 198 aa8.38□□□□□ -1.07
PDPN-211ENST00000617617 C18orf32Q8TCD1 76 aa8.38□□□□□ -1.07
PDPN-211ENST00000617617 TRBV6-5A0A0K0K1A5 114 aa8.38□□□□□ -1.07
PDPN-211ENST00000617617 D6R8Y8 96 aa8.38□□□□□ -1.07
PDPN-211ENST00000617617 NOP10Q9NPE3 64 aaKnown RBP8.38□□□□□ -1.07
PDPN-211ENST00000617617 IGHV4-28A0A0C4DH34 117 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 CKS2P33552 79 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 PRELID3AQ96N28 172 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 C20orf78Q9BR46 151 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 MRPL16Q9NX20 251 aaKnown RBP8.37□□□□□ -1.07
PDPN-211ENST00000617617 C5orf52A6NGY3 159 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 KIAA1644Q3SXP7 199 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 JPT2Q9H910 190 aa8.37□□□□□ -1.07
PDPN-211ENST00000617617 IGHV3-53P01767 116 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 Q6ZTI0 123 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 PACRGQ96M98 296 aaPredicted RBP8.36□□□□□ -1.07
PDPN-211ENST00000617617 SPATA25Q9BR10 227 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 SAMD10Q9BYL1 202 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 DKK2Q9UBU2 259 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 TRGV1A0A0A0MS02 117 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 A0A1B0GV90 55 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 M0QY20 66 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 SUMO4Q6EEV6 95 aa8.36□□□□□ -1.07
PDPN-211ENST00000617617 H7C1H1 209 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 K7EMI3 77 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 DEFA6Q01524 100 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 CHCHD1Q96BP2 118 aaKnown RBP8.35□□□□□ -1.07
PDPN-211ENST00000617617 DNAJC30Q96LL9 226 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 DNHD1Q96M86 4753 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 TNFRSF6BO95407 300 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 SNRPEP62304 92 aaKnown RBP8.35□□□□□ -1.07
PDPN-211ENST00000617617 HOXA5P20719 270 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 SBSPONQ8IVN8 264 aa8.35□□□□□ -1.07
PDPN-211ENST00000617617 A0A087WWL8 130 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 NPYP01303 97 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 OR4C5Q8NGB2 326 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 IGLV2-18A0A075B6J9 118 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 TRBV10-1A0A0K0K1A3 114 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 LINC00310P59036 64 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 B9D2Q9BPU9 175 aa8.34□□□□□ -1.07
PDPN-211ENST00000617617 MGPP08493 103 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 GATA1P15976 413 aaPredicted RBP8.33□□□□□ -1.08
PDPN-211ENST00000617617 MAP1LC3AQ9H492 121 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 NXT2Q9NPJ8 142 aaKnown RBP8.33□□□□□ -1.08
PDPN-211ENST00000617617 TRBV6-4A0A1B0GX49 114 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 SPART-AS1P0CW21 52 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 Q8N8P6 123 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 URB1-AS1Q96HZ7 61 aa8.33□□□□□ -1.08
PDPN-211ENST00000617617 NBEAL1Q6ZS30 2694 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 NDUFA6P56556 154 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 FAM222AQ5U5X8 452 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 CBY1Q9Y3M2 126 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 GAS8-AS1O95177 125 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 PCP4P48539 62 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 POLR2KP53803 58 aaKnown RBP8.32□□□□□ -1.08
PDPN-211ENST00000617617 ZNF56Q15929 161 aa8.32□□□□□ -1.08
PDPN-211ENST00000617617 HUWE1Q7Z6Z7 4374 aaKnown RBP8.31□□□□□ -1.08
PDPN-211ENST00000617617 TRAV26-2A0A0B4J265 109 aa8.31□□□□□ -1.08
PDPN-211ENST00000617617 GAGE12BA1L429 117 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms