RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 FAM74A4Q5TZK3 123 aa16.32■□□□□ 0.2
PTPRF-216ENST00000617451 HMCN2Q8NDA2 5059 aa16.32■□□□□ 0.2
PTPRF-216ENST00000617451 OR11H4Q8NGC9 324 aa16.32■□□□□ 0.2
PTPRF-216ENST00000617451 ZC2HC1AQ96GY0 325 aa16.32■□□□□ 0.2
PTPRF-216ENST00000617451 CHAC1Q9BUX1 264 aa16.32■□□□□ 0.2
PTPRF-216ENST00000617451 FAT3Q8TDW7 4589 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 M0R036 132 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 UBE2G2P60604 165 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 Q5BKY6 102 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 COX8CQ7Z4L0 72 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 SFRP2Q96HF1 295 aa16.31■□□□□ 0.2
PTPRF-216ENST00000617451 A0A087WWL8 130 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 CTXND1A0A1B0GTU2 59 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 GRIFINA4D1Z8 144 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 HIST1H2BAQ96A08 127 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 UBE2WQ96B02 151 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 CHCHD7Q9BUK0 85 aa16.3■□□□□ 0.2
PTPRF-216ENST00000617451 NKX6-2Q9C056 277 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-216ENST00000617451 FAM74A7A6NL05 159 aa16.29■□□□□ 0.2
PTPRF-216ENST00000617451 SH2D1AO60880 128 aa16.29■□□□□ 0.2
PTPRF-216ENST00000617451 KRTAP10-4P60372 401 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-216ENST00000617451 RPL7L1Q6DKI1 246 aaKnown RBP16.29■□□□□ 0.2
PTPRF-216ENST00000617451 ATRAIDQ6UW56 229 aa16.29■□□□□ 0.2
PTPRF-216ENST00000617451 ZFP30Q9Y2G7 519 aa16.29■□□□□ 0.2
PTPRF-216ENST00000617451 PHLDA3Q9Y5J5 127 aa16.29■□□□□ 0.2
PTPRF-216ENST00000617451 A0A087WX48 190 aa16.28■□□□□ 0.2
PTPRF-216ENST00000617451 ELOBQ15370 118 aa16.28■□□□□ 0.2
PTPRF-216ENST00000617451 MED28Q9H204 178 aa16.28■□□□□ 0.2
PTPRF-216ENST00000617451 FAM162BQ5T6X4 162 aa16.27■□□□□ 0.2
PTPRF-216ENST00000617451 CIRBP-AS1Q8TBR5 109 aa16.27■□□□□ 0.2
PTPRF-216ENST00000617451 TRBV10-1A0A0K0K1A3 114 aa16.26■□□□□ 0.19
PTPRF-216ENST00000617451 INO80EQ8NBZ0 244 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-216ENST00000617451 BORCS7-ASMTA0A0B4J1R7 106 aa16.25■□□□□ 0.19
PTPRF-216ENST00000617451 M0R381 172 aa16.25■□□□□ 0.19
PTPRF-216ENST00000617451 TPT1P13693 172 aaKnown RBP16.25■□□□□ 0.19
PTPRF-216ENST00000617451 UBE2D3P61077 147 aa16.25■□□□□ 0.19
PTPRF-216ENST00000617451 UBE2D2P62837 147 aa16.25■□□□□ 0.19
PTPRF-216ENST00000617451 PKHD1L1Q86WI1 4243 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 RPL36AP83881 106 aaKnown RBP16.24■□□□□ 0.19
PTPRF-216ENST00000617451 Q0VG73 95 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 ZNF674Q2M3X9 581 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 LINC01559Q495D7 138 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 KCNIP4Q6PIL6 250 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 RPL36ALQ969Q0 106 aaKnown RBP16.24■□□□□ 0.19
PTPRF-216ENST00000617451 FMC1Q96HJ9 113 aa16.24■□□□□ 0.19
PTPRF-216ENST00000617451 TRBV7-3A0A075B6L6 115 aa16.23■□□□□ 0.19
PTPRF-216ENST00000617451 TMSB15BA0A087X1C1 80 aa16.23■□□□□ 0.19
PTPRF-216ENST00000617451 GIPP09681 153 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-216ENST00000617451 ZFP82Q8N141 532 aa16.23■□□□□ 0.19
PTPRF-216ENST00000617451 SERTAD4-AS1Q5TG53 156 aa16.22■□□□□ 0.19
PTPRF-216ENST00000617451 TRBV6-1A0A0K0K1D8 114 aa16.21■□□□□ 0.19
PTPRF-216ENST00000617451 UBE2G1P62253 170 aa16.21■□□□□ 0.19
PTPRF-216ENST00000617451 AKR1C8PQ5T2L2 129 aa16.21■□□□□ 0.19
PTPRF-216ENST00000617451 OR10G8Q8NGN5 311 aa16.21■□□□□ 0.19
PTPRF-216ENST00000617451 TMEM262E9PQX1 116 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 OXTP01178 125 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 LTAP01374 205 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 IGLV2-8P01709 118 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 C14orf177Q52M58 125 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 ENHOQ6UWT2 76 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 C1orf43Q9BWL3 253 aa16.2■□□□□ 0.18
PTPRF-216ENST00000617451 FXYD6-FXYD2A0A087WZ82 144 aa16.19■□□□□ 0.18
PTPRF-216ENST00000617451 TRBV6-8A0A0A6YYG3 113 aa16.19■□□□□ 0.18
PTPRF-216ENST00000617451 PTTG1O95997 202 aa16.19■□□□□ 0.18
PTPRF-216ENST00000617451 MAP1LC3B2A6NCE7 125 aa16.18■□□□□ 0.18
PTPRF-216ENST00000617451 TCEAL7Q9BRU2 100 aa16.18■□□□□ 0.18
PTPRF-216ENST00000617451 MAP1LC3BQ9GZQ8 125 aa16.18■□□□□ 0.18
PTPRF-216ENST00000617451 UBR4Q5T4S7 5183 aa16.18■□□□□ 0.18
PTPRF-216ENST00000617451 FHITP49789 147 aa16.17■□□□□ 0.18
PTPRF-216ENST00000617451 RAB4BP61018 213 aa16.17■□□□□ 0.18
PTPRF-216ENST00000617451 C15orf54Q8N8G6 183 aa16.16■□□□□ 0.18
PTPRF-216ENST00000617451 CRPP02741 224 aa16.15■□□□□ 0.18
PTPRF-216ENST00000617451 MPV17L2Q567V2 206 aa16.15■□□□□ 0.18
PTPRF-216ENST00000617451 CST9LP1Q5W188 147 aa16.15■□□□□ 0.18
PTPRF-216ENST00000617451 PRR27Q6MZM9 219 aa16.15■□□□□ 0.18
PTPRF-216ENST00000617451 NEXN-AS1Q8NBZ9 246 aa16.15■□□□□ 0.18
PTPRF-216ENST00000617451 USP17L23D6RBM5 183 aa16.12■□□□□ 0.17
PTPRF-216ENST00000617451 ANGP03950 147 aaKnown RBP16.12■□□□□ 0.17
PTPRF-216ENST00000617451 AKR1C3P42330 323 aa16.12■□□□□ 0.17
PTPRF-216ENST00000617451 ZNF56Q15929 161 aa16.12■□□□□ 0.17
PTPRF-216ENST00000617451 OR10AG1Q8NH19 301 aa16.12■□□□□ 0.17
PTPRF-216ENST00000617451 STOML3Q8TAV4 291 aa16.12■□□□□ 0.17
PTPRF-216ENST00000617451 CHCHD5Q9BSY4 110 aa16.11■□□□□ 0.17
PTPRF-216ENST00000617451 CYTL1Q9NRR1 136 aa16.11■□□□□ 0.17
PTPRF-216ENST00000617451 CXCL1P09341 107 aa16.1■□□□□ 0.17
PTPRF-216ENST00000617451 PKIAP61925 76 aa16.1■□□□□ 0.17
PTPRF-216ENST00000617451 RPL19P84098 196 aaKnown RBP16.1■□□□□ 0.17
PTPRF-216ENST00000617451 MIAQ16674 131 aa16.1■□□□□ 0.17
PTPRF-216ENST00000617451 ZNF471Q9BX82 626 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-216ENST00000617451 G3V3Q6 166 aa16.09■□□□□ 0.17
PTPRF-216ENST00000617451 HLA-DQA1P01909 254 aa16.09■□□□□ 0.17
PTPRF-216ENST00000617451 PRSS1P07477 247 aa16.09■□□□□ 0.17
PTPRF-216ENST00000617451 RPL37AP61513 92 aaKnown RBP16.09■□□□□ 0.17
PTPRF-216ENST00000617451 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-216ENST00000617451 SSBP4Q9BWG4 385 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-216ENST00000617451 SNAI2O43623 268 aa16.08■□□□□ 0.16
PTPRF-216ENST00000617451 PAGE4O60829 102 aa16.08■□□□□ 0.16
PTPRF-216ENST00000617451 DGAT2L7PQ6IED9 249 aa16.08■□□□□ 0.16
PTPRF-216ENST00000617451 NTM-AS1Q6ZSK4 140 aa16.08■□□□□ 0.16
PTPRF-216ENST00000617451 MLST8Q9BVC4 326 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms