RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 A8MWV9 139 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 C20orf78Q9BR46 151 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 HCFC1P51610 2035 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 DNAJC9-AS1A6NH13 148 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 Q8N6K4 173 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 C4orf3Q8WVX3 66 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 COL12A1Q99715 3063 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 ADAMTSL5Q6ZMM2 481 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 WFDC11Q8NEX6 87 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 C9orf118A6NHY6 69 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 CMC4P56277 68 aaPredicted RBP6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 P0DMU3 169 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 FAM231AP0DMU4 169 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 FAM231CP0DMU5 169 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 LINC01545Q5VT33 79 aa6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 CITED2Q99967 270 aaPredicted RBP6.78□□□□□ -1.32
PDLIM5-222ENST00000615540 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.77□□□□□ -1.334e-6■□□□□ 9.7
PDLIM5-222ENST00000615540 SPATA12Q7Z6I5 190 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 OPRPNQ99935 248 aaPredicted RBP6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 DLX4Q92988 240 aaPredicted RBP6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 A0A0J9YY99 117 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 F8VRH5 84 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 DNAL4O96015 105 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 CRPP02741 224 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 ZFP2Q6ZN57 461 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 GATD1Q8NB37 220 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 MGAQ8IWI9 3026 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 EBI3Q14213 229 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 DEFB121Q5J5C9 76 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 RASL10AQ92737 203 aa6.77□□□□□ -1.33
PDLIM5-222ENST00000615540 FSTL3O95633 263 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 PRR9Q5T870 116 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 BAALCQ8WXS3 180 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 C1QTNF4Q9BXJ3 329 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 Q6YL49 198 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 SPTA1P02549 2419 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 TSPAN13O95857 204 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 AVPP01185 164 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 ZNF493Q6ZR52 646 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 GPHB5Q86YW7 130 aa6.76□□□□□ -1.33
PDLIM5-222ENST00000615540 F5H768 121 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 MRGPRG-AS1Q2M3A8 158 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 CLPSL1A2RUU4 121 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 GAS8-AS1O95177 125 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 CKS1BP61024 79 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 LURAP1LQ8IV03 231 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 LENEPQ9Y5L5 61 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 TRBV25-1A0A075B6N4 114 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 RBMY1BA6NDE4 496 aaKnown RBP6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 RBMY1EA6NEQ0 496 aaKnown RBP6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 LINC01549A6NIU2 74 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 RBMY1DP0C7P1 496 aaKnown RBP6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 RBMY1A1P0DJD3 496 aaKnown RBP6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 RBMY1CP0DJD4 496 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 PRIMA1Q86XR5 153 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 TOMM6Q96B49 74 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 SMR3AQ99954 134 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 DEFB4AO15263 64 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 ESM1Q9NQ30 184 aa6.75□□□□□ -1.33
PDLIM5-222ENST00000615540 CEMP1Q6PRD7 247 aaPredicted RBP6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 PRM2P04554 102 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 APC2O95996 2303 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 TRAV8-4A0A0B4J246 113 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 A0A1W2PPM0 123 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 KRTAP10-9P60411 292 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 TRAV8-3A0A0A6YYJ7 113 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 K7EP34 96 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 IGLC6P0CF74 106 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 DAD1P61803 113 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 K7EMT4 169 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 CCL25O15444 150 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 MORN3Q6PF18 240 aaPredicted RBP6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 AMTNQ6UX39 209 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 RNF185Q96GF1 192 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 MAP6D1Q9H9H5 199 aa6.74□□□□□ -1.33
PDLIM5-222ENST00000615540 A0A0J9YX75 114 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 J3QQQ9 107 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 RHODO00212 210 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 PAX4O43316 350 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 IGHG4P01861 327 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 PFN2P35080 140 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 CST9LQ9H4G1 147 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 C11orf21Q9P2W6 132 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 TMEM61Q8N0U2 210 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 PTPRBP23467 1997 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 DPH3Q96FX2 82 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 TMEM243Q9BU79 118 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 ATXN8Q156A1 80 aa6.73□□□□□ -1.33
PDLIM5-222ENST00000615540 K7EQD1 137 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 C12orf74Q32Q52 190 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 C6orf226Q5I0X4 101 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 SPTBN1Q01082 2364 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 C3orf56Q8N813 242 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 ZNF702PQ9H963 129 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 BDP1A6H8Y1 2624 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 MUC6Q6W4X9 2439 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 C9JAW5 83 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 NDUFA12Q9UI09 145 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 H3BMG7 143 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms