RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 TWIST1Q15672 202 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 OR10AG1Q8NH19 301 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 C9orf85Q96MD7 179 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 TMEM208Q9BTX3 173 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 MRPL18Q9H0U6 180 aaKnown RBP8.19□□□□□ -1.1
LINC00539-204ENST00000608957 DKK2Q9UBU2 259 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 PHLDA3Q9Y5J5 127 aa8.19□□□□□ -1.1
LINC00539-204ENST00000608957 DEFB131BA0A096LNP1 70 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 PHOX2AO14813 284 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 NXPH4O95158 308 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 SSTP61278 116 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 ZNF415Q09FC8 603 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 FAM222AQ5U5X8 452 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 SPANXN1Q5VSR9 72 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 MDFICQ9P1T7 246 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 BIRC6Q9NR09 4857 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 DNAH10Q8IVF4 4471 aa8.18□□□□□ -1.1
LINC00539-204ENST00000608957 PLAC8L1A1L4L8 177 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 APCSP02743 223 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 SPART-AS1P0CW21 52 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 HTN1P15515 57 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 NTF3P20783 257 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 TCTAP57738 103 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 SLAQ13239 276 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 ZNF493Q6ZR52 646 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 ZFP82Q8N141 532 aa8.17□□□□□ -1.1
LINC00539-204ENST00000608957 M0R381 172 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 TRGC1P0CF51 173 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 AZU1P20160 251 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 RRN3P1Q2M238 152 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 TMEM191AQ9H0A3 160 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 MSRB1Q9NZV6 116 aa8.16□□□□□ -1.1
LINC00539-204ENST00000608957 DMRTA1Q5VZB9 504 aa8.15□□□□□ -1.1
LINC00539-204ENST00000608957 SMIM15Q7Z3B0 74 aa8.15□□□□□ -1.1
LINC00539-204ENST00000608957 C11orf72Q8NBR9 251 aa8.15□□□□□ -1.1
LINC00539-204ENST00000608957 SYT8Q8NBV8 401 aa8.15□□□□□ -1.1
LINC00539-204ENST00000608957 TMEM263Q8WUH6 116 aaKnown RBP8.15□□□□□ -1.1
LINC00539-204ENST00000608957 AP1S3Q96PC3 154 aa8.15□□□□□ -1.1
LINC00539-204ENST00000608957 HIST1H2BKO60814 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BJP06899 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BOP23527 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BBP33778 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BDP58876 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BCP62807 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST2H2BEQ16778 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.14□□□□□ -1.11
LINC00539-204ENST00000608957 AMN1Q8IY45 258 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 RNASE8Q8TDE3 154 aaKnown RBP8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BHQ93079 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 C16orf74Q96GX8 76 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BNQ99877 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 HIST1H2BMQ99879 126 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 GSN-AS1Q9NRJ2 163 aa8.14□□□□□ -1.11
LINC00539-204ENST00000608957 EVI2AP22794 236 aa8.13□□□□□ -1.11
LINC00539-204ENST00000608957 SRIP30626 198 aa8.13□□□□□ -1.11
LINC00539-204ENST00000608957 KIAA1644Q3SXP7 199 aa8.13□□□□□ -1.11
LINC00539-204ENST00000608957 FAM104BQ5XKR9 115 aa8.13□□□□□ -1.11
LINC00539-204ENST00000608957 SPXQ9BT56 116 aa8.13□□□□□ -1.11
LINC00539-204ENST00000608957 TEX48A0A1B0GUV7 120 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 M0R2P5 195 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 HTN3P15516 51 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 DAD1P61803 113 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 MRPL51Q4U2R6 128 aaKnown RBP8.12□□□□□ -1.11
LINC00539-204ENST00000608957 PIK3CD-AS1Q5SR53 167 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 PTH2Q96A98 100 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 RNF185Q96GF1 192 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 NDUFAF3Q9BU61 184 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 DPH3P1Q9H4G8 78 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 MUC4Q99102 2169 aa8.12□□□□□ -1.11
LINC00539-204ENST00000608957 SMIM17P0DL12 118 aa8.11□□□□□ -1.11
LINC00539-204ENST00000608957 ZNF876PQ49A33 203 aa8.11□□□□□ -1.11
LINC00539-204ENST00000608957 LYRM9A8MSI8 78 aa8.1□□□□□ -1.11
LINC00539-204ENST00000608957 S100A6P06703 90 aa8.1□□□□□ -1.11
LINC00539-204ENST00000608957 MGPP08493 103 aa8.1□□□□□ -1.11
LINC00539-204ENST00000608957 RAB4AP20338 218 aa8.1□□□□□ -1.11
LINC00539-204ENST00000608957 ORMDL3Q8N138 153 aa8.1□□□□□ -1.11
LINC00539-204ENST00000608957 C14orf178Q8N769 122 aaPredicted RBP8.1□□□□□ -1.11
LINC00539-204ENST00000608957 ALKBH7Q9BT30 221 aaPredicted RBP8.1□□□□□ -1.11
LINC00539-204ENST00000608957 A8MWV9 139 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 D6R8Y8 96 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 DEFB130BP0DP73 79 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 DEFB130AP0DP74 79 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 NDUFA6P56556 154 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 DAZ2Q13117 558 aaKnown RBP8.09□□□□□ -1.11
LINC00539-204ENST00000608957 OR10J3Q5JRS4 329 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 POM121L12Q8N7R1 296 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 JPT2Q9H910 190 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 MRPL16Q9NX20 251 aaKnown RBP8.09□□□□□ -1.11
LINC00539-204ENST00000608957 KIF25-AS1Q9Y6Z4 181 aa8.09□□□□□ -1.11
LINC00539-204ENST00000608957 A0A087WWL8 130 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 TRGV1A0A0A0MS02 117 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 SMKR1H3BMG3 65 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 NCR2O95944 276 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 PPBPP02775 128 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 CKS2P33552 79 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 Q0VG73 95 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 COA6Q5JTJ3 125 aaKnown RBP8.08□□□□□ -1.12
LINC00539-204ENST00000608957 C18orf32Q8TCD1 76 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 MRAP2Q96G30 205 aa8.08□□□□□ -1.12
LINC00539-204ENST00000608957 NOP10Q9NPE3 64 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms