RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 HIGD1CA8MV81 97 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 NXPH4O95158 308 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 HOXA5P20719 270 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 NTF3P20783 257 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 CTRLP40313 264 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 FHL2Q14192 279 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 FAM74A4Q5TZK3 123 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 POM121L12Q8N7R1 296 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 PRADC1Q9BSG0 188 aa11.75□□□□□ -0.53
USHBP1-210ENST00000600286 IGHV3-73A0A0B4J1V6 119 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 A0A0J9YY99 117 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 H3BNG1 76 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 RIGQ13278 110 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 RNF212Q495C1 297 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 GTSF1Q8WW33 167 aa11.74□□□□□ -0.53
USHBP1-210ENST00000600286 A0A087WWL8 130 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 A0A1B0GUT8 65 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 NUDT3O95989 172 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 ADCYAP1P18509 176 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 C10orf91Q5T1B1 145 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 CNFNQ9BYD5 112 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 CTDSP1Q9GZU7 261 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 JPT2Q9H910 190 aa11.73□□□□□ -0.53
USHBP1-210ENST00000600286 CARHSP1Q9Y2V2 147 aaKnown RBP11.73□□□□□ -0.53
USHBP1-210ENST00000600286 TRBV6-4A0A1B0GX49 114 aa11.72□□□□□ -0.53
USHBP1-210ENST00000600286 SMIM27A0A1W2PRY6 76 aa11.72□□□□□ -0.53
USHBP1-210ENST00000600286 F5H697 171 aa11.72□□□□□ -0.53
USHBP1-210ENST00000600286 GATA1P15976 413 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-210ENST00000600286 CRYBA4P53673 196 aa11.72□□□□□ -0.53
USHBP1-210ENST00000600286 C14orf178Q8N769 122 aaPredicted RBP11.72□□□□□ -0.53
USHBP1-210ENST00000600286 EPPK1P58107 5090 aaKnown RBP11.72□□□□□ -0.53
USHBP1-210ENST00000600286 CRYGDP07320 174 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 RHOHQ15669 191 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 ZNF56Q15929 161 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 NUP35Q8NFH5 326 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 SAMD10Q9BYL1 202 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 ICOSQ9Y6W8 199 aa11.71□□□□□ -0.53
USHBP1-210ENST00000600286 MUC4Q99102 2169 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 A0A1B0GW15 77 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 APOC3P02656 99 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 S100A8P05109 93 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 RAB4BP61018 213 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 MRPL23Q16540 153 aaKnown RBP11.7□□□□□ -0.54
USHBP1-210ENST00000600286 SVBPQ8N300 66 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 DPH3P1Q9H4G8 78 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 MSRB1Q9NZV6 116 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 APLNQ9ULZ1 77 aa11.7□□□□□ -0.54
USHBP1-210ENST00000600286 PLECQ15149 4684 aaKnown RBP11.7□□□□□ -0.54
USHBP1-210ENST00000600286 SNAPINO95295 136 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 MGPP08493 103 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 GYPEP15421 78 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 RHEBQ15382 184 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 KCNIP4Q6PIL6 250 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 SH2D6Q7Z4S9 175 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 SLC7A5P1Q8MH63 180 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 CLRN3Q8NCR9 226 aa11.69□□□□□ -0.54
USHBP1-210ENST00000600286 H7C1H1 209 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 S100PP25815 95 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 SRIP30626 198 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 UFSP1Q6NVU6 142 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 SLC25A29Q8N8R3 303 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 VSIG2Q96IQ7 327 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 IMMP2LQ96T52 175 aa11.68□□□□□ -0.54
USHBP1-210ENST00000600286 ALMS1Q8TCU4 4167 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 K7EQD1 137 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 P0DMU3 169 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 FAM231AP0DMU4 169 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 FAM231CP0DMU5 169 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 EVI2AP22794 236 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.67□□□□□ -0.54
USHBP1-210ENST00000600286 RPS10P5Q9NQ39 176 aa11.67□□□□□ -0.54
USHBP1-210ENST00000600286 C7orf77A4D0Y5 90 aa11.66□□□□□ -0.54
USHBP1-210ENST00000600286 CCL18P55774 89 aa11.66□□□□□ -0.54
USHBP1-210ENST00000600286 UBE2DNLQ8IWF7 75 aa11.66□□□□□ -0.54
USHBP1-210ENST00000600286 TMEM242Q9NWH2 141 aa11.66□□□□□ -0.54
USHBP1-210ENST00000600286 A0A087WWC5 75 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 TRBV10-1A0A0K0K1A3 114 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 LCE6AA0A183 80 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 NEGR1Q7Z3B1 354 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 ATP5L2Q7Z4Y8 100 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 BTF3L4Q96K17 158 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 KIF25-AS1Q9Y6Z4 181 aa11.65□□□□□ -0.54
USHBP1-210ENST00000600286 CAMPP49913 170 aa11.64□□□□□ -0.55
USHBP1-210ENST00000600286 FAM3BP58499 235 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-210ENST00000600286 HBBP68871 147 aa11.64□□□□□ -0.55
USHBP1-210ENST00000600286 RPL36AP83881 106 aaKnown RBP11.64□□□□□ -0.55
USHBP1-210ENST00000600286 RPL36ALQ969Q0 106 aaKnown RBP11.64□□□□□ -0.55
USHBP1-210ENST00000600286 TMEM191AQ9H0A3 160 aa11.64□□□□□ -0.55
USHBP1-210ENST00000600286 A0A096LPF7 62 aa11.63□□□□□ -0.55
USHBP1-210ENST00000600286 MRPL54Q6P161 138 aaKnown RBP11.63□□□□□ -0.55
USHBP1-210ENST00000600286 Q6ZSN1 163 aa11.63□□□□□ -0.55
USHBP1-210ENST00000600286 FRZBQ92765 325 aa11.63□□□□□ -0.55
USHBP1-210ENST00000600286 TRAV9-1A0A075B6T8 112 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 GAGE12JA6NER3 117 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 GAGE1Q13065 139 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 GAGE4Q13068 117 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 GAGE5Q13069 117 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 GAGE13Q4V321 117 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 LGALS9CQ6DKI2 356 aa11.62□□□□□ -0.55
USHBP1-210ENST00000600286 TNFRSF18Q9Y5U5 241 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms