RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 LYZL1Q6UWQ5 148 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 FAM231DQ6ZW35 169 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 GTSF1Q8WW33 167 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 TPPP3Q9BW30 176 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 RPP21Q9H633 154 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 KIF25-AS1Q9Y6Z4 181 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 NACAE9PAV3 2078 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 DNAH10Q8IVF4 4471 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 LINC00315P59091 139 aa9.76□□□□□ -0.85
SHKBP1-217ENST00000598558 RPL23P62829 140 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-217ENST00000598558 FAM74A4Q5TZK3 123 aa9.76□□□□□ -0.85
SHKBP1-217ENST00000598558 Q6ZR54 194 aa9.76□□□□□ -0.85
SHKBP1-217ENST00000598558 DNAH2Q9P225 4427 aa9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 GATCO43716 136 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 TMEM241Q24JQ0 296 aa9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 SPANXN1Q5VSR9 72 aa9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 NEGR1Q7Z3B1 354 aa9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 MRPS16Q9Y3D3 137 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-217ENST00000598558 LINC00694P0DN24 101 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 SRIP30626 198 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 FAM3BP58499 235 aaPredicted RBP9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 ERVFC1-1P60608 527 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 RAB14P61106 215 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 RHOHQ15669 191 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 ISOC2Q96AB3 205 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 UPK3BQ9BT76 320 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 SMDT1Q9H4I9 107 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 Q9H8V8 135 aa9.74□□□□□ -0.85
SHKBP1-217ENST00000598558 GAGE12JA6NER3 117 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 RHODO00212 210 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 CTRLP40313 264 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 GAGE1Q13065 139 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 GAGE4Q13068 117 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 GAGE5Q13069 117 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 GAGE13Q4V321 117 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 FAM74A3Q4VXF1 159 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 PRADC1Q9BSG0 188 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 KRTAP1-5Q9BYS1 174 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 OSTCQ9NRP0 149 aa9.73□□□□□ -0.85
SHKBP1-217ENST00000598558 A0A1W2PPQ1 181 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 XKRY2A2RUG3 117 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 F2Z2F3 143 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 NTF3P20783 257 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 SOHLH1Q5JUK2 328 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 NAT8Q9UHE5 227 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 V9GYV3 84 aa9.72□□□□□ -0.85
SHKBP1-217ENST00000598558 NBDYA0A0U1RRE5 68 aa9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 EVI2AP22794 236 aa9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 FOXA3P55318 350 aaPredicted RBP9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 CACNG7P62955 275 aa9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 ADIRFQ15847 76 aa9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 CNFNQ9BYD5 112 aa9.71□□□□□ -0.86
SHKBP1-217ENST00000598558 A8MWL6 223 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 RTL8CO15255 209 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 CT83Q5H943 113 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 WDR73Q6P4I2 378 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 WFDC10BQ8IUB3 73 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 PGLYRP4Q96LB8 373 aa9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 EPPK1P58107 5090 aaKnown RBP9.7□□□□□ -0.86
SHKBP1-217ENST00000598558 DNAH17Q9UFH2 4485 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 RAB4BP61018 213 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 ZNF56Q15929 161 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 ATP6V0E2Q8NHE4 81 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 TSKUQ8WUA8 353 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 AP1S3Q96PC3 154 aa9.69□□□□□ -0.86
SHKBP1-217ENST00000598558 TIRAPP58753 221 aa9.68□□□□□ -0.86
SHKBP1-217ENST00000598558 TWIST1Q15672 202 aa9.68□□□□□ -0.86
SHKBP1-217ENST00000598558 NEXN-AS1Q8NBZ9 246 aa9.68□□□□□ -0.86
SHKBP1-217ENST00000598558 OR10G8Q8NGN5 311 aa9.68□□□□□ -0.86
SHKBP1-217ENST00000598558 F5H697 171 aa9.67□□□□□ -0.86
SHKBP1-217ENST00000598558 SIVA1O15304 175 aa9.67□□□□□ -0.86
SHKBP1-217ENST00000598558 SH2D6Q7Z4S9 175 aa9.67□□□□□ -0.86
SHKBP1-217ENST00000598558 GTSF1LQ9H1H1 148 aa9.67□□□□□ -0.86
SHKBP1-217ENST00000598558 HIGD1CA8MV81 97 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 M0QY20 66 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 MGPP08493 103 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 UBE2D3P61077 147 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 UBE2D2P62837 147 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 SUMO4Q6EEV6 95 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 C15orf54Q8N8G6 183 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 TNFRSF18Q9Y5U5 241 aa9.66□□□□□ -0.86
SHKBP1-217ENST00000598558 FAT2Q9NYQ8 4349 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 TRBV10-1A0A0K0K1A3 114 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 TRGC1P0CF51 173 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 SMIM17P0DL12 118 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 ADCYAP1P18509 176 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 Q8N3U1 123 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 NUP35Q8NFH5 326 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 GFRA4Q9GZZ7 299 aa9.65□□□□□ -0.86
SHKBP1-217ENST00000598558 FRAS1Q86XX4 4008 aa9.65□□□□□ -0.87
SHKBP1-217ENST00000598558 TRBV7-3A0A075B6L6 115 aa9.64□□□□□ -0.87
SHKBP1-217ENST00000598558 IGHV3-38A0A0C4DH36 116 aa9.64□□□□□ -0.87
SHKBP1-217ENST00000598558 FAM231BA6NCW3 169 aa9.64□□□□□ -0.87
SHKBP1-217ENST00000598558 LELP1Q5T871 98 aa9.64□□□□□ -0.87
SHKBP1-217ENST00000598558 DPH3P1Q9H4G8 78 aa9.64□□□□□ -0.87
SHKBP1-217ENST00000598558 TRAV26-2A0A0B4J265 109 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 SMIM27A0A1W2PRY6 76 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 TMEM218A2RU14 115 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 GAS8-AS1O95177 125 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 DNAH10OSP0CZ25 163 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms