RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SAPCD1Q5SSQ6 148 aa6.41□□□□□ -1.38
TRIM28-210ENST00000597618 WDR73Q6P4I2 378 aa6.41□□□□□ -1.38
TRIM28-210ENST00000597618 OR11H4Q8NGC9 324 aa6.41□□□□□ -1.38
TRIM28-210ENST00000597618 SPACA4Q8TDM5 124 aa6.41□□□□□ -1.38
TRIM28-210ENST00000597618 SDHCQ99643 169 aaPredicted RBP6.41□□□□□ -1.38
TRIM28-210ENST00000597618 KIF25-AS1Q9Y6Z4 181 aa6.41□□□□□ -1.38
TRIM28-210ENST00000597618 A0A087WWL8 130 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.4□□□□□ -1.38
TRIM28-210ENST00000597618 H3BVH4 76 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 LYRM1O43325 122 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 PRNTQ86SH4 94 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 SCGB1C1Q8TD33 95 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 PRR34Q9NV39 138 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 PLAC8Q9NZF1 115 aa6.4□□□□□ -1.38
TRIM28-210ENST00000597618 MUC2Q02817 5179 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 hDV102S1A0JD36 115 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 CCDC160A6NGH7 325 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 PLA2G10O15496 165 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 PTTG1O95997 202 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 CHTF8P0CG12 524 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 PRR3P79522 188 aaKnown RBP6.39□□□□□ -1.39
TRIM28-210ENST00000597618 LRRC37A5PQ49AS3 106 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 KRTAP26-1Q6PEX3 210 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 REG3GQ6UW15 175 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 OR10G8Q8NGN5 311 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 SFRP2Q96HF1 295 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 CHCHD5Q9BSY4 110 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 AP5S1Q9NUS5 200 aa6.39□□□□□ -1.39
TRIM28-210ENST00000597618 FABP5P3A8MUU1 101 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 B4DEV8 164 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 H2AFB2P0C5Z0 115 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 ARL14EPLP0DKL9 152 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 KRTAP10-8P60410 259 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 CLPSL2Q6UWE3 100 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.38□□□□□ -1.39
TRIM28-210ENST00000597618 RBM38Q9H0Z9 239 aaKnown RBP6.38□□□□□ -1.39
TRIM28-210ENST00000597618 PHLDA3Q9Y5J5 127 aa6.38□□□□□ -1.39
TRIM28-210ENST00000597618 H0YIZ8 118 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 M0R381 172 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 HMGB3O15347 200 aaKnown RBP6.37□□□□□ -1.39
TRIM28-210ENST00000597618 ARMS2P0C7Q2 107 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 RAB2AP61019 212 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 DNLZQ5SXM8 178 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 LINC00269Q8N2A0 174 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 GTSF1Q8WW33 167 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 KRTAP9-2Q9BYQ4 174 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 EPDR1Q9UM22 224 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 HSPB11Q9Y547 144 aa6.37□□□□□ -1.39
TRIM28-210ENST00000597618 TPT1P13693 172 aaKnown RBP6.36□□□□□ -1.39
TRIM28-210ENST00000597618 RBX1P62877 108 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 TMEM97Q5BJF2 176 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 SPINK6Q6UWN8 80 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 ZFP82Q8N141 532 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 SMIM3Q9BZL3 60 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 ARL2-SNX15V9GYD0 113 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 FAT4Q6V0I7 4981 aa6.36□□□□□ -1.39
TRIM28-210ENST00000597618 KRBOX1C9JBD0 128 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 M0R036 132 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 SIX6O95475 246 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 STAG3L2P0CL84 134 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 STAG3L3P0CL85 134 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 CDC34P49427 236 aaPredicted RBP6.35□□□□□ -1.39
TRIM28-210ENST00000597618 RAB4BP61018 213 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 SUMO1P63165 101 aaKnown RBP6.35□□□□□ -1.39
TRIM28-210ENST00000597618 CYCSP99999 105 aaKnown RBP6.35□□□□□ -1.39
TRIM28-210ENST00000597618 NEXN-AS1Q8NBZ9 246 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 SUN5Q8TC36 379 aa6.35□□□□□ -1.39
TRIM28-210ENST00000597618 IGLV10-54A0A075B6I4 117 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 TRAV8-4A0A0B4J246 113 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 GRIFINA4D1Z8 144 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 P01737 135 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 SLPIP03973 132 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 PET100P0DJ07 73 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 GCHFRP30047 84 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 REG3AQ06141 175 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 ZNF56Q15929 161 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 Q86TA4 180 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 TMEM167BQ9NRX6 74 aa6.34□□□□□ -1.39
TRIM28-210ENST00000597618 TRBV25-1A0A075B6N4 114 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 TRAV34A0A0B4J273 112 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 FAM240BA0A1B0GVZ2 78 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 RPL12P30050 165 aaKnown RBP6.33□□□□□ -1.4
TRIM28-210ENST00000597618 GAGE6Q13070 117 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 MAJINQ3KP22 176 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 FAM162BQ5T6X4 162 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 PRR27Q6MZM9 219 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 PPP1R1CQ8WVI7 109 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 RAB24Q969Q5 203 aa6.33□□□□□ -1.4
TRIM28-210ENST00000597618 SH2D1AO60880 128 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 NDUFS6O75380 124 aaKnown RBP6.32□□□□□ -1.4
TRIM28-210ENST00000597618 GZMBP10144 247 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 COX6A2Q02221 97 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 NTM-AS1Q6ZSK4 140 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 DERL1Q9BUN8 251 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 VAX2Q9UIW0 290 aa6.32□□□□□ -1.4
TRIM28-210ENST00000597618 TMSB15BA0A087X1C1 80 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 IGKV2-24A0A0C4DH68 120 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 TRBV6-1A0A0K0K1D8 114 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 A0A0U1RQV1 116 aa6.31□□□□□ -1.4
TRIM28-210ENST00000597618 A0A1W2PRE2 83 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms