RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 SPINK4O60575 86 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 SCO1O75880 301 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 NXPH4O95158 308 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 S100A8P05109 93 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 LGALS9BQ3B8N2 356 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 ZNF876PQ49A33 203 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 MRPL54Q6P161 138 aaKnown RBP8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 WDR73Q6P4I2 378 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 SMIM15Q7Z3B0 74 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 ATP5L2Q7Z4Y8 100 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 AP1S3Q96PC3 154 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 CNFNQ9BYD5 112 aa8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 MRPL16Q9NX20 251 aaKnown RBP8.61□□□□□ -1.03
SHKBP1-213ENST00000597325 A0A1B0GW15 77 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 TRGC1P0CF51 173 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 SPART-AS1P0CW21 52 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 HBBP68871 147 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 PIK3CD-AS1Q5SR53 167 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 FAM222AQ5U5X8 452 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 PTH2Q96A98 100 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 NDUFAF3Q9BU61 184 aa8.6□□□□□ -1.03
SHKBP1-213ENST00000597325 TRGV2A0A075B6R0 118 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 IGHV4-4A0A075B6R2 117 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 SMIM17P0DL12 118 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 NTF3P20783 257 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 ELOBQ15370 118 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 DMRTA1Q5VZB9 504 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 Q6ZTI0 123 aa8.59□□□□□ -1.03
SHKBP1-213ENST00000597325 TGIF2-C20orf24A0A0A6YYL0 155 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 A0A0J9YWU9 116 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 GAGE12BA1L429 117 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 A8MWV9 139 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 GAGE7O76087 117 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 GAGE12FP0CL80 117 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 GAGE12GP0CL81 117 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 GAGE12IP0CL82 117 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 CAMPP49913 170 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 RAB4BP61018 213 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 DAD1P61803 113 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 RASL11AQ6T310 242 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 RASL10AQ92737 203 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 DKK2Q9UBU2 259 aa8.58□□□□□ -1.04
SHKBP1-213ENST00000597325 TRBV24-1A0A075B6N3 115 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 A0A1B0GVY2 172 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 A0A1B0GXF2 115 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 DEFB130BP0DP73 79 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 DEFB130AP0DP74 79 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 COX19Q49B96 90 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 FAM210BQ96KR6 192 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 MSRB1Q9NZV6 116 aa8.57□□□□□ -1.04
SHKBP1-213ENST00000597325 RHODO00212 210 aa8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 MGPP08493 103 aa8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 FAM74A4Q5TZK3 123 aa8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 OR4C5Q8NGB2 326 aa8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 CELA1Q9UNI1 258 aa8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 APOBP04114 4563 aaKnown RBP8.56□□□□□ -1.04
SHKBP1-213ENST00000597325 A0A087WWL8 130 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 TRAV4A0A0B4J268 109 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 LINC00612Q8N6U2 182 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 C14orf178Q8N769 122 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 YPEL4Q96NS1 127 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 TMEM191AQ9H0A3 160 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 DPH3P1Q9H4G8 78 aa8.55□□□□□ -1.04
SHKBP1-213ENST00000597325 LRP1BQ9NZR2 4599 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 RS1O15537 224 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 IGHV3-53P01767 116 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 HLA-DQA1P01909 254 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 MT-ND6P03923 174 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 EVI2AP22794 236 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 ZNF56Q15929 161 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 CFAP126Q5VTH2 177 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 JPT2Q9H910 190 aa8.54□□□□□ -1.04
SHKBP1-213ENST00000597325 F5H697 171 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 CIDEAO60543 219 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 ZFP2Q6ZN57 461 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 GATD1Q8NB37 220 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 C11orf45Q8TAV5 145 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 FRZBQ92765 325 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 C18orf15Q96N68 181 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 GNB1LQ9BYB4 327 aa8.53□□□□□ -1.04
SHKBP1-213ENST00000597325 IGHV3-73A0A0B4J1V6 119 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 TRGV4A0A0C4DH28 118 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 ATP5G1P05496 136 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 RAB5AP20339 215 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 LGALS9CQ6DKI2 356 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 TMEM136Q6ZRR5 245 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 AMN1Q8IY45 258 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 SAMD10Q9BYL1 202 aa8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 DMBT1Q9UGM3 2413 aaPredicted RBP8.52□□□□□ -1.05
SHKBP1-213ENST00000597325 COLCA2A8K830 154 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 APCSP02743 223 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 CRYGDP07320 174 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 HTN3P15516 51 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 RPS10P46783 165 aaKnown RBP8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 C12orf74Q32Q52 190 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 FAM104BQ5XKR9 115 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 ZNF479Q96JC4 524 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 TRAPPC1Q9Y5R8 145 aa8.51□□□□□ -1.05
SHKBP1-213ENST00000597325 H7C1H1 209 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms