RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TMEM250H0YL14 139 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 OR5AL1P0C617 328 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 IGLC6P0CF74 106 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 SSTP61278 116 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 RHOHQ15669 191 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 C1orf134Q5TEV5 83 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 FAM74A4Q5TZK3 123 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 WFDC10BQ8IUB3 73 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 ZFP82Q8N141 532 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 MSRB1Q9NZV6 116 aa7.6□□□□□ -1.19
VRK3-210ENST00000596121 PRSS29PA6NIE9 313 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 SIVA1O15304 175 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 SRP19P09132 144 aaKnown RBP7.59□□□□□ -1.19
VRK3-210ENST00000596121 LINC00315P59091 139 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 SRSF3P84103 164 aaKnown RBP7.59□□□□□ -1.19
VRK3-210ENST00000596121 LINC00336Q6ZUF6 198 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 C6orf223Q8N319 242 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 PRADC1Q9BSG0 188 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 EIF5A2Q9GZV4 153 aaKnown RBP7.59□□□□□ -1.19
VRK3-210ENST00000596121 RNASE7Q9H1E1 156 aaKnown RBP7.59□□□□□ -1.19
VRK3-210ENST00000596121 TNFRSF18Q9Y5U5 241 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 KIF25-AS1Q9Y6Z4 181 aa7.59□□□□□ -1.19
VRK3-210ENST00000596121 PKHD1P08F94 4074 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 GAGE12JA6NER3 117 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 P01737 135 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 CEBPGP53567 150 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 TIRAPP58753 221 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 IFITM2Q01629 132 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 GAGE1Q13065 139 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 GAGE4Q13068 117 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 GAGE5Q13069 117 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 GAGE13Q4V321 117 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 DAZAP1Q96EP5 407 aaKnown RBP7.58□□□□□ -1.2
VRK3-210ENST00000596121 KRTAP17-1Q9BYP8 105 aa7.58□□□□□ -1.2
VRK3-210ENST00000596121 A0A1W2PPQ1 181 aa7.57□□□□□ -1.2
VRK3-210ENST00000596121 RHODO00212 210 aa7.57□□□□□ -1.2
VRK3-210ENST00000596121 TNP2Q05952 138 aa7.57□□□□□ -1.2
VRK3-210ENST00000596121 FER1L6-AS1Q8NA97 138 aa7.57□□□□□ -1.2
VRK3-210ENST00000596121 ATP6V0E2Q8NHE4 81 aa7.57□□□□□ -1.2
VRK3-210ENST00000596121 NDUFS6O75380 124 aaKnown RBP7.56□□□□□ -1.2
VRK3-210ENST00000596121 DNAH10OSP0CZ25 163 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 RPS20P60866 119 aaKnown RBP7.56□□□□□ -1.2
VRK3-210ENST00000596121 SPANXN1Q5VSR9 72 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 LYZL1Q6UWQ5 148 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 SH2D6Q7Z4S9 175 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 GTSF1Q8WW33 167 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 TPPP3Q9BW30 176 aa7.56□□□□□ -1.2
VRK3-210ENST00000596121 TTC32Q5I0X7 151 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 Q6ZRN7 208 aaPredicted RBP7.55□□□□□ -1.2
VRK3-210ENST00000596121 LINC01551Q86U37 167 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 Q8N3U1 123 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 SMIM7Q9BQ49 75 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 GTSF1LQ9H1H1 148 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 RPP21Q9H633 154 aaKnown RBP7.55□□□□□ -1.2
VRK3-210ENST00000596121 BIN3Q9NQY0 253 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 DNAH5Q8TE73 4624 aa7.55□□□□□ -1.2
VRK3-210ENST00000596121 KIAA1109Q2LD37 5005 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 RAB4BP61018 213 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 SOHLH1Q5JUK2 328 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 LELP1Q5T871 98 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 FAM231DQ6ZW35 169 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 LY96Q9Y6Y9 160 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 LRP1BQ9NZR2 4599 aa7.54□□□□□ -1.2
VRK3-210ENST00000596121 ZNF727A8MUV8 499 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 GATCO43716 136 aaKnown RBP7.53□□□□□ -1.2
VRK3-210ENST00000596121 NTF3P20783 257 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 EVI2AP22794 236 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 CTRLP40313 264 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 UBE2D3P61077 147 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 UBE2D2P62837 147 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 CACNG7P62955 275 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 ZNF56Q15929 161 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 NDUFA5Q16718 116 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 NEXN-AS1Q8NBZ9 246 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 OR10G8Q8NGN5 311 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 HERC2O95714 4834 aa7.53□□□□□ -1.2
VRK3-210ENST00000596121 IGHV3-38A0A0C4DH36 116 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 TRBV10-1A0A0K0K1A3 114 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 XKRY2A2RUG3 117 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 F2Z2F3 143 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 FOXA3P55318 350 aaPredicted RBP7.52□□□□□ -1.21
VRK3-210ENST00000596121 LINC01556Q5JQF7 62 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 OR10J3Q5JRS4 329 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 AP1S3Q96PC3 154 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 CNFNQ9BYD5 112 aa7.52□□□□□ -1.21
VRK3-210ENST00000596121 TRAV8-6A0A0B4J262 113 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 F5H697 171 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 M0QY20 66 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 IGHV3-30P01768 117 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 IGHV3-33P01772 117 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 IGHV3-30-3P0DP02 117 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 IGHV3-30-5P0DP03 117 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 ERVFC1-1P60608 527 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 RPL23P62829 140 aaKnown RBP7.51□□□□□ -1.21
VRK3-210ENST00000596121 SUMO4Q6EEV6 95 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 WDR73Q6P4I2 378 aa7.51□□□□□ -1.21
VRK3-210ENST00000596121 TRBV7-3A0A075B6L6 115 aa7.5□□□□□ -1.21
VRK3-210ENST00000596121 MGPP08493 103 aa7.5□□□□□ -1.21
VRK3-210ENST00000596121 BTF3P20290 206 aaKnown RBP7.5□□□□□ -1.21
VRK3-210ENST00000596121 RPL36AP83881 106 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms