RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 LYRM7Q5U5X0 104 aa12.94□□□□□ -0.34
SHKBP1-205ENST00000594973 TEN1Q86WV5 123 aa12.94□□□□□ -0.34
SHKBP1-205ENST00000594973 TEX29Q8N6K0 151 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 GLMPQ8WWB7 406 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 RNF185Q96GF1 192 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 C16orf92Q96LL3 132 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 PLNP26678 52 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 IL17RELQ6ZVW7 336 aa12.93□□□□□ -0.34
SHKBP1-205ENST00000594973 IGLC6P0CF74 106 aa12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 RPL11P62913 178 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 LRRC75A-AS1Q8N1F1 130 aa12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 Q8N8P6 123 aa12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 CARD19Q96LW7 228 aa12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 MRPL35Q9NZE8 188 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 PRRC2AP48634 2157 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 MYO9AB2RTY4 2548 aa12.92□□□□□ -0.34
SHKBP1-205ENST00000594973 IGKV3-7A0A075B6H7 116 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 A0A087WX48 190 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 PRSS29PA6NIE9 313 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 TNFRSF6BO95407 300 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 SRSF2Q01130 221 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 VPREB3Q9UKI3 123 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 SBSPONQ8IVN8 264 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 CNFNQ9BYD5 112 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 AGPAT4-IT1Q9H0P7 198 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 AGRNO00468 2067 aa12.91□□□□□ -0.34
SHKBP1-205ENST00000594973 MYMXA0A1B0GTQ4 84 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 FSHBP01225 129 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 ORM1P02763 201 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 ZNF688P0C7X2 276 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 PSMB8P28062 276 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 MYOZ3Q8TDC0 251 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 DUX5Q96PT3 197 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 UFC1Q9Y3C8 167 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 SONP18583 2426 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 TRBV7-9A0A0J9YWB2 115 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 SRD5A1P18405 259 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 Q6YL49 198 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 KRTAP1-3Q8IUG1 177 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 CITED1Q99966 193 aa12.9□□□□□ -0.34
SHKBP1-205ENST00000594973 RBAKDNA6NC62 111 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 B5MCH6 92 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 UBE2D3P61077 147 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 UBE2D2P62837 147 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 TMEM78Q5T7P6 136 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 FLNAP21333 2647 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 KMT2BQ9UMN6 2715 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 EDN2P20800 178 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 C20orf173Q96LM9 149 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 SPANXA1Q9NS26 97 aa12.89□□□□□ -0.35
SHKBP1-205ENST00000594973 IGLV2-18A0A075B6J9 118 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 PSMB2P49721 201 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 GPHB5Q86YW7 130 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 FABP5P3A8MUU1 101 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 RHPN1-AS1Q9BWJ2 59 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 DAZ1Q9NQZ3 744 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 ITPR2Q14571 2701 aa12.88□□□□□ -0.35
SHKBP1-205ENST00000594973 TRBV20-1A0A075B6N2 111 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 TRAV12-1A0A0B4J245 112 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 NHLRC4P0CG21 123 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 UBE2D1P51668 147 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 DEFB1P60022 68 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 SHISA2Q6UWI4 295 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 C9orf139Q6ZV77 190 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 IGHV7-4-1A0A0J9YVY3 117 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 RHODO00212 210 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 WFDC11Q8NEX6 87 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 MRPL53Q96EL3 112 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 RAX2Q96IS3 184 aa12.87□□□□□ -0.35
SHKBP1-205ENST00000594973 ZNF575Q86XF7 245 aa12.86□□□□□ -0.35
SHKBP1-205ENST00000594973 ZNF580Q9UK33 172 aa12.86□□□□□ -0.35
SHKBP1-205ENST00000594973 A8MWV9 139 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE12JA6NER3 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 LINC01549A6NIU2 74 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 H7C1H1 209 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE7O76087 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE12FP0CL80 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE12GP0CL81 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE12IP0CL82 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 ASIPP42127 132 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 GAGE4Q13068 117 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 LAGE3Q14657 143 aa12.85□□□□□ -0.35
SHKBP1-205ENST00000594973 F8VRH5 84 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 J3KRW8 73 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 M0QXV9 152 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 Q6ZQT7 251 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 C9orf47Q6ZRZ4 202 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 PTH2Q96A98 100 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 ZNF702PQ9H963 129 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 LOC107984156A0A0G2JMH3 177 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 LGALS1P09382 135 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 HERV-K104P63124 156 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 ARL17AQ8IVW1 177 aa12.84□□□□□ -0.35
SHKBP1-205ENST00000594973 NF1P21359 2839 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 SOCS3O14543 225 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 GAS8-AS1O95177 125 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 PLA2G2AP14555 144 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 MSRB1Q9NZV6 116 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 C11orf21Q9P2W6 132 aa12.83□□□□□ -0.36
SHKBP1-205ENST00000594973 CUBNO60494 3623 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms