RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 ATP6V0E2Q8NHE4 81 aa10.2□□□□□ -0.78
CLIP3-202ENST00000585466 SSBP4Q9BWG4 385 aaPredicted RBP10.2□□□□□ -0.78
CLIP3-202ENST00000585466 PHLDA3Q9Y5J5 127 aa10.2□□□□□ -0.78
CLIP3-202ENST00000585466 TRAV9-2A0A087WT02 112 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 A0A087WWL8 130 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 GAGE12JA6NER3 117 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 M0R381 172 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 RHODO00212 210 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 GAGE1Q13065 139 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 GAGE4Q13068 117 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 GAGE5Q13069 117 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 GAGE13Q4V321 117 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 EIF5AL1Q6IS14 154 aaKnown RBP10.19□□□□□ -0.78
CLIP3-202ENST00000585466 NFE4Q86UQ8 179 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 ZFP82Q8N141 532 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 Q8N3U1 123 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 KRTAP4-5Q9BYR2 181 aa10.19□□□□□ -0.78
CLIP3-202ENST00000585466 DNAH8Q96JB1 4490 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 hCG_2014768A0A024R1R8 64 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 TRBV20OR9-2A0A075B6H5 130 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 CDK2AP2O75956 126 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 FUSP35637 526 aaKnown RBP eCLIP10.18□□□□□ -0.78
CLIP3-202ENST00000585466 CENPWQ5EE01 88 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 AKAP14Q86UN6 197 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 C10orf126Q8N4M7 172 aa10.18□□□□□ -0.78
CLIP3-202ENST00000585466 A0A087WTM6 91 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 TRAV8-6A0A0B4J262 113 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 IBA57-AS1B1ANH7 110 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 OR5AL1P0C617 328 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 MEF2BQ02080 365 aaPredicted RBP10.17□□□□□ -0.78
CLIP3-202ENST00000585466 OR10J3Q5JRS4 329 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 FAM74A4Q5TZK3 123 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 PRR27Q6MZM9 219 aa10.17□□□□□ -0.78
CLIP3-202ENST00000585466 RAB19A4D1S5 217 aa10.16□□□□□ -0.78
CLIP3-202ENST00000585466 C19orf71A6NCJ1 209 aa10.16□□□□□ -0.78
CLIP3-202ENST00000585466 BCL2P10415 239 aa10.16□□□□□ -0.78
CLIP3-202ENST00000585466 LRCOL1A6NCL2 159 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 IGHV3-30P01768 117 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 IGHV3-33P01772 117 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 IGHV3-30-3P0DP02 117 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 IGHV3-30-5P0DP03 117 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 ERVFC1-1P60608 527 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 KIF25-AS1Q9Y6Z4 181 aa10.15□□□□□ -0.78
CLIP3-202ENST00000585466 MUC21A0A0G2JKD1 596 aa10.14□□□□□ -0.79
CLIP3-202ENST00000585466 MUC21A0A140T8X8 626 aa10.14□□□□□ -0.79
CLIP3-202ENST00000585466 A0A1B0GVG6 124 aa10.14□□□□□ -0.79
CLIP3-202ENST00000585466 IGLC6P0CF74 106 aa10.14□□□□□ -0.79
CLIP3-202ENST00000585466 OR10G8Q8NGN5 311 aa10.14□□□□□ -0.79
CLIP3-202ENST00000585466 TRBV10-1A0A0K0K1A3 114 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 TEX46H3BTG2 121 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 PDE6DO43924 150 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 GZMBP10144 247 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 UBE2D3P61077 147 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 UBE2D2P62837 147 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 SMIM12Q96EX1 92 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 VAX2Q9UIW0 290 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 BOLA1Q9Y3E2 137 aa10.13□□□□□ -0.79
CLIP3-202ENST00000585466 LAGE3Q14657 143 aa10.12□□□□□ -0.79
CLIP3-202ENST00000585466 LYPD6BQ8NI32 183 aa10.12□□□□□ -0.79
CLIP3-202ENST00000585466 FAT1Q14517 4588 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 RBFOX3A6NFN3 312 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 IFNA1P01562 189 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 GNG4P50150 75 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 RAB4BP61018 213 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 CDPF1Q6NVV7 123 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 ALKAL2Q6UX46 152 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 NEXN-AS1Q8NBZ9 246 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 MED9Q9NWA0 146 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 PGPEP1Q9NXJ5 209 aa10.11□□□□□ -0.79
CLIP3-202ENST00000585466 TRBV7-3A0A075B6L6 115 aa10.1□□□□□ -0.79
CLIP3-202ENST00000585466 A0A087WWC5 75 aa10.1□□□□□ -0.79
CLIP3-202ENST00000585466 NKX2-5P52952 324 aaPredicted RBP10.1□□□□□ -0.79
CLIP3-202ENST00000585466 DAZ4Q86SG3 579 aaKnown RBP10.1□□□□□ -0.79
CLIP3-202ENST00000585466 NIT1Q86X76 327 aa10.1□□□□□ -0.79
CLIP3-202ENST00000585466 OR2D3Q8NGH3 330 aa10.1□□□□□ -0.79
CLIP3-202ENST00000585466 Q9HAA7 133 aa10.1□□□□□ -0.79
CLIP3-202ENST00000585466 DAZ3Q9NR90 486 aaKnown RBP10.1□□□□□ -0.79
CLIP3-202ENST00000585466 K7EN84 100 aa10.09□□□□□ -0.79
CLIP3-202ENST00000585466 KRTAP10-1P60331 282 aa10.09□□□□□ -0.79
CLIP3-202ENST00000585466 SPANXN1Q5VSR9 72 aa10.09□□□□□ -0.79
CLIP3-202ENST00000585466 DNAJC30Q96LL9 226 aa10.09□□□□□ -0.79
CLIP3-202ENST00000585466 EREGO14944 169 aa10.08□□□□□ -0.8
CLIP3-202ENST00000585466 TAGLN2P37802 199 aaKnown RBP10.08□□□□□ -0.8
CLIP3-202ENST00000585466 RPL36AP83881 106 aaKnown RBP10.08□□□□□ -0.8
CLIP3-202ENST00000585466 WFDC2Q14508 124 aa10.08□□□□□ -0.8
CLIP3-202ENST00000585466 ZNF56Q15929 161 aa10.08□□□□□ -0.8
CLIP3-202ENST00000585466 MAPKAPK5-AS1Q8N8E1 139 aa10.08□□□□□ -0.8
CLIP3-202ENST00000585466 FER1L6-AS1Q8NA97 138 aa10.08□□□□□ -0.8
CLIP3-202ENST00000585466 RPL36ALQ969Q0 106 aaKnown RBP10.08□□□□□ -0.8
CLIP3-202ENST00000585466 RPS20P60866 119 aaKnown RBP10.07□□□□□ -0.8
CLIP3-202ENST00000585466 SSTP61278 116 aa10.07□□□□□ -0.8
CLIP3-202ENST00000585466 NUDT10Q8NFP7 164 aa10.07□□□□□ -0.8
CLIP3-202ENST00000585466 NUDT11Q96G61 164 aa10.07□□□□□ -0.8
CLIP3-202ENST00000585466 AP1S3Q96PC3 154 aa10.07□□□□□ -0.8
CLIP3-202ENST00000585466 VPS13BQ7Z7G8 4022 aa10.06□□□□□ -0.8
CLIP3-202ENST00000585466 P01737 135 aa10.06□□□□□ -0.8
CLIP3-202ENST00000585466 XGP55808 180 aa10.06□□□□□ -0.8
CLIP3-202ENST00000585466 BLOC1S1P78537 153 aa10.06□□□□□ -0.8
CLIP3-202ENST00000585466 OCC1Q8TAD7 63 aa10.06□□□□□ -0.8
CLIP3-202ENST00000585466 DAZAP1Q96EP5 407 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms