RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TWIST1Q15672 202 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 BAGE3Q86Y29 109 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 APRG1Q8IVJ8 170 aa7.49□□□□□ -1.21
SS18-221ENST00000582448 C7orf71A4D174 169 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 KLLNB2CW77 178 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 OR11H12B2RN74 326 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 UBE2CO00762 179 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 IGLC6P0CF74 106 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 HLA-DRB4P13762 266 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 CACNG7P62955 275 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 GTSCR1Q86UQ5 136 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 MAP6D1Q9H9H5 199 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 HLA-DRB4X5D2U9 266 aa7.48□□□□□ -1.21
SS18-221ENST00000582448 IGKV3D-20A0A0C4DH25 116 aa7.47□□□□□ -1.21
SS18-221ENST00000582448 AMBPP02760 352 aa7.47□□□□□ -1.21
SS18-221ENST00000582448 NUTF2P61970 127 aaKnown RBP7.47□□□□□ -1.21
SS18-221ENST00000582448 OR10J3Q5JRS4 329 aa7.47□□□□□ -1.21
SS18-221ENST00000582448 GDF5OSQ5U4N7 250 aa7.47□□□□□ -1.21
SS18-221ENST00000582448 SPANXN1Q5VSR9 72 aa7.47□□□□□ -1.21
SS18-221ENST00000582448 TRAV12-3A0A0B4J271 114 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 KNCNA6PVL3 124 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 OR5AL1P0C617 328 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 SRIP30626 198 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 SSTP61278 116 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 Q0VG73 95 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 COA6Q5JTJ3 125 aaKnown RBP7.46□□□□□ -1.22
SS18-221ENST00000582448 PRR9Q5T870 116 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 PHLDA3Q9Y5J5 127 aa7.46□□□□□ -1.22
SS18-221ENST00000582448 LOC102724200A0A096LPH7 203 aaPredicted RBP7.45□□□□□ -1.22
SS18-221ENST00000582448 H3BMM0 161 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 NTF3P20783 257 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 SLAQ13239 276 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 SPINK13Q1W4C9 94 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 KIAA1644Q3SXP7 199 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 ANXA2RQ3ZCQ2 193 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 MUC21Q5SSG8 566 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 GFI1BQ5VTD9 330 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 ZNF493Q6ZR52 646 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 STHQ8IWL8 128 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 GATD1Q8NB37 220 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 TMEM18Q96B42 140 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 CNFNQ9BYD5 112 aa7.45□□□□□ -1.22
SS18-221ENST00000582448 TIMM8BQ9Y5J9 83 aaPredicted RBP7.45□□□□□ -1.22
SS18-221ENST00000582448 H3BVH4 76 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 M0R2Z0 102 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 INSP01308 110 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 CD7P09564 240 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 HIST3H2BBQ8N257 126 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 DEFB125Q8N687 156 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 TMEM191AQ9H0A3 160 aa7.44□□□□□ -1.22
SS18-221ENST00000582448 TRAV12-2A0A075B6T6 113 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 IGHV1OR15-1A0A075B7D0 117 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 MUC21A0A0G2JKD1 596 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 MUC21A0A140T8X8 626 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 SNAI2O43623 268 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 PPBPP02775 128 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 TDRG1Q3Y452 100 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 PDZD11Q5EBL8 140 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 DNLZQ5SXM8 178 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 FAM104BQ5XKR9 115 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 AMTNQ6UX39 209 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 C20orf144Q9BQM9 153 aa7.43□□□□□ -1.22
SS18-221ENST00000582448 ALKBH7Q9BT30 221 aaPredicted RBP7.43□□□□□ -1.22
SS18-221ENST00000582448 IGHV4-4A0A075B6R2 117 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 CBY3A6NI87 242 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 A8MTW9 85 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 SMIM17P0DL12 118 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 FABP4P15090 132 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 CKS2P33552 79 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 ODF3L2Q3SX64 289 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 ORMDL3Q8N138 153 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 OR10AG1Q8NH19 301 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 TMEM208Q9BTX3 173 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 SAMD10Q9BYL1 202 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 WFDC10AQ9H1F0 79 aa7.42□□□□□ -1.22
SS18-221ENST00000582448 PLECQ15149 4684 aaKnown RBP7.42□□□□□ -1.22
SS18-221ENST00000582448 M0R381 172 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 GNRH2O43555 120 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 ZNF324O75467 553 aaPredicted RBP7.41□□□□□ -1.22
SS18-221ENST00000582448 FXYD7P58549 80 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 C18orf32Q8TCD1 76 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 PACRGQ96M98 296 aaPredicted RBP7.41□□□□□ -1.22
SS18-221ENST00000582448 AP1S3Q96PC3 154 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 C1QTNF4Q9BXJ3 329 aa7.41□□□□□ -1.22
SS18-221ENST00000582448 ALMS1Q8TCU4 4167 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 HSBP1O75506 76 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 SERF1AO75920 110 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 ESDP10768 282 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 RNASEKQ6P5S7 137 aaKnown RBP7.4□□□□□ -1.22
SS18-221ENST00000582448 Q6ZQT7 251 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 AMN1Q8IY45 258 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 TMEM256Q8N2U0 113 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 OR10D4PQ8NGN7 298 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 CHCHD1Q96BP2 118 aaKnown RBP7.4□□□□□ -1.22
SS18-221ENST00000582448 PRELID3AQ96N28 172 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 LINC01587Q99440 93 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 HIST1H2BLQ99880 126 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 LAMTOR2Q9Y2Q5 125 aa7.4□□□□□ -1.22
SS18-221ENST00000582448 D6R8Y8 96 aa7.39□□□□□ -1.23
SS18-221ENST00000582448 SMIM6P0DI80 62 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms