RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SETXQ7Z333 2677 aaKnown RBP-0.86□□□□□ -2.55
SS18-214ENST00000580003 FLNAP21333 2647 aaKnown RBP-0.86□□□□□ -2.55
SS18-214ENST00000580003 BORCS7-ASMTA0A0B4J1R7 106 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 A0A1B0GW64 132 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 CCDC179H3BU77 68 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 CCL3L1P16619 93 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 SAMD13Q5VXD3 122 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 V9GYV3 84 aa-0.86□□□□□ -2.55
SS18-214ENST00000580003 HELZP42694 1942 aaKnown RBP-0.86□□□□□ -2.55
SS18-214ENST00000580003 SONP18583 2426 aaKnown RBP-0.86□□□□□ -2.55
SS18-214ENST00000580003 ARHGAP31Q2M1Z3 1444 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 FLGP20930 4061 aaPredicted RBP-0.87□□□□□ -2.55
SS18-214ENST00000580003 DPM2O94777 84 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 RBP4P02753 201 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 GCHFRP30047 84 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 Q6ZRX8 168 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 ATP6V0E2Q8NHE4 81 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 CDC26Q8NHZ8 85 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 CALML5Q9NZT1 146 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 DCHS2Q6V1P9 2916 aa-0.87□□□□□ -2.55
SS18-214ENST00000580003 ABCA13Q86UQ4 5058 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 CREBBPQ92793 2442 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 A0A0D9SFI3 127 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 A0A1B0GV72 72 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 TMEM14DPA8MWL7 114 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 SMIM24O75264 130 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 ACYP2P14621 99 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 G0S2P27469 103 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 TMEM128Q5BJH2 165 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 UBE2DNLQ8IWF7 75 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 MAGOHBQ96A72 148 aaKnown RBP-0.88□□□□□ -2.55
SS18-214ENST00000580003 CENPHQ9H3R5 247 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 SSC5DA1L4H1 1573 aa-0.88□□□□□ -2.55
SS18-214ENST00000580003 A0A087WTM6 91 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 SLC25A6P12236 298 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 INSL4Q14641 139 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 TMEM91Q6ZNR0 172 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 COX7B2Q8TF08 81 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 IFI27L1Q96BM0 104 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 BATF3Q9NR55 127 aa-0.89□□□□□ -2.55
SS18-214ENST00000580003 NOP16Q9Y3C1 178 aaKnown RBP-0.89□□□□□ -2.55
SS18-214ENST00000580003 ZNF142P52746 1687 aaPredicted RBP-0.89□□□□□ -2.55
SS18-214ENST00000580003 FAT2Q9NYQ8 4349 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 TFF1P04155 84 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 GNG10P50151 68 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 TFAMQ00059 246 aaKnown RBP-0.9□□□□□ -2.55
SS18-214ENST00000580003 SNX29P2Q8IUI4 249 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 OR8I2Q8N0Y5 310 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 CNFNQ9BYD5 112 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 V9GYQ6 96 aa-0.9□□□□□ -2.55
SS18-214ENST00000580003 SETD2Q9BYW2 2564 aaPredicted RBP-0.91□□□□□ -2.55
SS18-214ENST00000580003 TGP01266 2768 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 DEGS1O15121 323 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 PAEPP09466 180 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 SPRR2DP22532 72 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 RPS28P62857 69 aaKnown RBP-0.91□□□□□ -2.56
SS18-214ENST00000580003 SKA2Q8WVK7 121 aaPredicted RBP-0.91□□□□□ -2.56
SS18-214ENST00000580003 NBEAL1Q6ZS30 2694 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 OVOS2A0A0G2JMS6 1433 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 HECTD1Q9ULT8 2610 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 DOPEY2Q9Y3R5 2298 aa-0.91□□□□□ -2.56
SS18-214ENST00000580003 SVEP1Q4LDE5 3571 aa-0.92□□□□□ -2.56
SS18-214ENST00000580003 HECTD4Q9Y4D8 3996 aa-0.92□□□□□ -2.56
SS18-214ENST00000580003 WFDC2Q14508 124 aa-0.92□□□□□ -2.56
SS18-214ENST00000580003 Q96NJ1 140 aa-0.92□□□□□ -2.56
SS18-214ENST00000580003 EP300Q09472 2414 aaPredicted RBP-0.92□□□□□ -2.56
SS18-214ENST00000580003 NHSL1Q5SYE7 1610 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 COL12A1Q99715 3063 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 VWFP04275 2813 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 M0R3E3 92 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 SPINK8P0C7L1 97 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 HLA-DRB4P13762 266 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 ATP11AUNQ6ZP68 121 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 C20orf197Q8N268 126 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 SMPXQ9UHP9 88 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 DNAJC15Q9Y5T4 150 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 HLA-DRB4X5D2U9 266 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 AKAP6Q13023 2319 aa-0.93□□□□□ -2.56
SS18-214ENST00000580003 SPTBN2O15020 2390 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 ZNF815PA8K554 130 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 J3KT08 172 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 J3QLW9 94 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 S100GP29377 79 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 SPCS2Q15005 226 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 DEFB109BQ30KR1 87 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 SSBP3-AS1Q7Z2R9 100 aa-0.94□□□□□ -2.56
SS18-214ENST00000580003 PLXNA2O75051 1894 aa-0.95□□□□□ -2.56
SS18-214ENST00000580003 BSNQ9UPA5 3926 aa-0.95□□□□□ -2.56
SS18-214ENST00000580003 PIN1P1O15428 100 aa-0.95□□□□□ -2.56
SS18-214ENST00000580003 PRO0255Q9UI72 69 aa-0.95□□□□□ -2.56
SS18-214ENST00000580003 DNHD1Q96M86 4753 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 PKD1L1Q8TDX9 2849 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 BIVM-ERCC5R4GMW8 1640 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 CELSR3Q9NYQ7 3312 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 TNRC18O15417 2968 aaPredicted RBP-0.96□□□□□ -2.56
SS18-214ENST00000580003 BANF2Q9H503 90 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 SPANXCQ9NY87 97 aa-0.96□□□□□ -2.56
SS18-214ENST00000580003 PTPRQQ9UMZ3 2332 aa-0.97□□□□□ -2.56
SS18-214ENST00000580003 RBM3P98179 157 aaKnown RBP-0.97□□□□□ -2.56
SS18-214ENST00000580003 MXRA5Q9NR99 2828 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms