RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TRGC1P0CF51 173 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 GZMBP10144 247 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 GYPEP15421 78 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 CTRLP40313 264 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 RAB4BP61018 213 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 PNRC1Q12796 327 aaPredicted RBP6.64□□□□□ -1.35
CCDC40-214ENST00000575431 ADIRFQ15847 76 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 FAM74A4Q5TZK3 123 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 UFSP1Q6NVU6 142 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 LYZL1Q6UWQ5 148 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 BORCS7Q96B45 105 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 A0A087WWL8 130 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 TRBV10-1A0A0K0K1A3 114 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 NACAE9PAV3 2078 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 ESRGQ1W209 222 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 OR10G8Q8NGN5 311 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 TSKUQ8WUA8 353 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 UPK3BQ9BT76 320 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 SAMD10Q9BYL1 202 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 JPT2Q9H910 190 aa6.63□□□□□ -1.35
CCDC40-214ENST00000575431 MRPS16Q9Y3D3 137 aaKnown RBP6.63□□□□□ -1.35
CCDC40-214ENST00000575431 MUC21A0A0G2JKD1 596 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 MUC21A0A140T8X8 626 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 PPP1R2P9O14990 202 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 NTF3P20783 257 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 TIRAPP58753 221 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 TWIST1Q15672 202 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 LYPD5Q6UWN5 251 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 SMIM15Q7Z3B0 74 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 C14orf178Q8N769 122 aaPredicted RBP6.62□□□□□ -1.35
CCDC40-214ENST00000575431 LINC00588Q9Y4M8 146 aa6.62□□□□□ -1.35
CCDC40-214ENST00000575431 STARD9Q9P2P6 4700 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 F5H697 171 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 H7C1H1 209 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 SSTP61278 116 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 RPL36AP83881 106 aaKnown RBP6.61□□□□□ -1.35
CCDC40-214ENST00000575431 ZNF56Q15929 161 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.61□□□□□ -1.35
CCDC40-214ENST00000575431 ATP6V0E2Q8NHE4 81 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 GTSF1Q8WW33 167 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 RPL36ALQ969Q0 106 aaKnown RBP6.61□□□□□ -1.35
CCDC40-214ENST00000575431 DPH3P1Q9H4G8 78 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 Q9H8V8 135 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 KIF25-AS1Q9Y6Z4 181 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 V9GYV3 84 aa6.61□□□□□ -1.35
CCDC40-214ENST00000575431 LINC00862A6NCI5 91 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 HIGD1CA8MV81 97 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 K7EP13 123 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 Q6ZSN1 163 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 ZNRF2Q8NHG8 242 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 FRZBQ92765 325 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 NAT8BQ9UHF3 227 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 DNAH7Q8WXX0 4024 aa6.6□□□□□ -1.35
CCDC40-214ENST00000575431 TRBV7-3A0A075B6L6 115 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 A0A087WWC5 75 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 LOC100131303A0A0U1RQF7 123 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 A0A1B0GUT8 65 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 TMEM218A2RU14 115 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 MT-ND4LP03901 98 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 EVI2AP22794 236 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 LINC00315P59091 139 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 RIGQ13278 110 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 TTC32Q5I0X7 151 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 COMMD7Q86VX2 200 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 ANAPC16Q96DE5 110 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 PGLYRP4Q96LB8 373 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 DNAJC30Q96LL9 226 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 GTSF1LQ9H1H1 148 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 MSRB1Q9NZV6 116 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 CSMD3Q7Z407 3707 aa6.59□□□□□ -1.35
CCDC40-214ENST00000575431 TENM2Q9NT68 2774 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 TRAV8-6A0A0B4J262 113 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 A0A1B0GW15 77 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 SMIM27A0A1W2PRY6 76 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 GAGE12JA6NER3 117 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 F8W036 122 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 SIVA1O15304 175 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 MGPP08493 103 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 LINC00694P0DN24 101 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 BTF3P20290 206 aaKnown RBP6.58□□□□□ -1.36
CCDC40-214ENST00000575431 GAGE1Q13065 139 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 GAGE4Q13068 117 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 GAGE5Q13069 117 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 GAGE13Q4V321 117 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 SEC11CQ9BY50 192 aa6.58□□□□□ -1.36
CCDC40-214ENST00000575431 TRAV9-2A0A087WT02 112 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 NBDYA0A0U1RRE5 68 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 M0QY20 66 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 S100A8P05109 93 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 UBE2D3P61077 147 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 UBE2D2P62837 147 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 TMEM97Q5BJF2 176 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 LELP1Q5T871 98 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 Q6ZR54 194 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 NUP35Q8NFH5 326 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 TNFRSF18Q9Y5U5 241 aa6.57□□□□□ -1.36
CCDC40-214ENST00000575431 IGLV2-18A0A075B6J9 118 aa6.56□□□□□ -1.36
CCDC40-214ENST00000575431 SUMO4Q6EEV6 95 aa6.56□□□□□ -1.36
CCDC40-214ENST00000575431 RASL11AQ6T310 242 aa6.56□□□□□ -1.36
CCDC40-214ENST00000575431 DAZ4Q86SG3 579 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms