RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 EIF4EBP1Q13541 118 aaPredicted RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 PABPC1L2AQ5JQF8 200 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 MEIG1Q5JSS6 88 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 TMEM91Q6ZNR0 172 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 C7orf65Q6ZTY9 151 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 FP248Q71RG6 208 aaPredicted RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 AAED1Q7RTV5 226 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 C8orf59Q8N0T1 100 aaPredicted RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 C5orf17Q8NAS9 161 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 C1orf64Q8NEQ6 169 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 PFN4Q8NHR9 129 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 LSM10Q969L4 123 aaKnown RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 UBE2WQ96B02 151 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 TMEM191AQ9H0A3 160 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 ZNF443Q9Y2A4 671 aaPredicted RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 LSM2Q9Y333 95 aaKnown RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 A0A1B0GVY2 172 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 A0A1B0GW54 56 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 C7orf71A4D174 169 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 C17orf98A8MV24 154 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 FNDC10F2Z333 226 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 ZNF737O75373 536 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 IGLV1-51P01701 117 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 SHBGP04278 402 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 AKAIN1P0CW23 69 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 PTHLHP12272 177 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 LGALS3P17931 250 aaKnown RBP1.88□□□□□ -2.11
VPS35-209ENST00000568642 CSN1S1P47710 185 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 UBE2AP49459 152 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 KRTAP10-3P60369 221 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 RPL18Q07020 188 aaKnown RBP1.88□□□□□ -2.11
VPS35-209ENST00000568642 PYY3Q5JQD4 70 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.88□□□□□ -2.11
VPS35-209ENST00000568642 LELP1Q5T871 98 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 ZNF880Q6PDB4 577 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 AMTNQ6UX39 209 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 SDIM1Q6ZPB5 146 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 Q6ZR54 194 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 C10orf105Q8TEF2 133 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 SLC25A46Q96AG3 418 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 LINC00479Q96M42 142 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 IER3IP1Q9Y5U9 82 aa1.88□□□□□ -2.11
VPS35-209ENST00000568642 APOBP04114 4563 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 SNRNP200O75643 2136 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 HEATR1Q9H583 2144 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 LRP2P98164 4655 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 IGLV3-12A0A075B6K2 115 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 A0A087X0T9 212 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 CST7O76096 145 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ZNF432O94892 652 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 SLC25A14O95258 325 aaPredicted RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 IGHV3-7P01780 117 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 CD3DP04234 171 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 FABP2P12104 132 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 HLA-DRB4P13762 266 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ZNF22P17026 224 aaPredicted RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 RPS10P46783 165 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 EIF2B2P49770 351 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 SNRPD3P62318 126 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 CATR1Q13166 79 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 HSD17B12Q53GQ0 312 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 SOSTDC1Q6X4U4 206 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 NR2C2APQ86WQ0 139 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ATOH7Q8N100 152 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 C10orf126Q8N4M7 172 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 MIR7-3HGQ8N6C7 128 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 RNF182Q8N6D2 247 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 CNEP1R1Q8N9A8 125 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 SMCR5Q8TEV8 140 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 PSMF1Q92530 271 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 RMI2Q96E14 147 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 RPRMQ9NS64 109 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 TNFRSF19Q9NS68 423 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ZNF355PQ9NSJ1 428 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ZNRD1Q9P1U0 126 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 COMMD3Q9UBI1 195 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 METTL1Q9UBP6 276 aaKnown RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 CKLFQ9UBR5 152 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 ZNF222Q9UK12 451 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 SOX21Q9Y651 276 aaPredicted RBP1.87□□□□□ -2.11
VPS35-209ENST00000568642 HLA-DRB4X5D2U9 266 aa1.87□□□□□ -2.11
VPS35-209ENST00000568642 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.86□□□□□ -2.11
VPS35-209ENST00000568642 IGHV3-15A0A0B4J1V0 119 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 A0A0J9YW62 118 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 CLPSL1A2RUU4 121 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 ZNF861PO60384 105 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 OR1I1O60431 355 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 SH2D1AO60880 128 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 LY6HO94772 140 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 CD14P08571 375 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 ELK1P19419 428 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 ZNF93P35789 620 aaPredicted RBP1.86□□□□□ -2.11
VPS35-209ENST00000568642 SUPT4H1P63272 117 aaKnown RBP1.86□□□□□ -2.11
VPS35-209ENST00000568642 RPL36AP83881 106 aaKnown RBP1.86□□□□□ -2.11
VPS35-209ENST00000568642 TMEM155Q4W5P6 130 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 GFI1BQ5VTD9 330 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 SPINK14Q6IE38 97 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 C2orf91Q6ZV80 131 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 DYNAPQ8N1N2 210 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 APCDD1LQ8NCL9 501 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms