RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LY96Q9Y6Y9 160 aa10.21□□□□□ -0.77
VPS39-210ENST00000568357 PDE6DO43924 150 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 IFNA1P01562 189 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 DNAH10OSP0CZ25 163 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 FAM74A4Q5TZK3 123 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 Q6ZRN7 208 aaPredicted RBP10.2□□□□□ -0.78
VPS39-210ENST00000568357 ZFP82Q8N141 532 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 SSBP4Q9BWG4 385 aaPredicted RBP10.2□□□□□ -0.78
VPS39-210ENST00000568357 VAX2Q9UIW0 290 aa10.2□□□□□ -0.78
VPS39-210ENST00000568357 TRBV20OR9-2A0A075B6H5 130 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 MUC21A0A0G2JKD1 596 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 MUC21A0A140T8X8 626 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 GAGE12JA6NER3 117 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 CXCL1P09341 107 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 GAGE1Q13065 139 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 GAGE4Q13068 117 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 GAGE5Q13069 117 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 GAGE13Q4V321 117 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 OR10AG1Q8NH19 301 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 ATP6V0E2Q8NHE4 81 aa10.19□□□□□ -0.78
VPS39-210ENST00000568357 LRP1BQ9NZR2 4599 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 TRAV9-2A0A087WT02 112 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 RHODO00212 210 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 SNAI2O43623 268 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 LINC00694P0DN24 101 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 EVI2AP22794 236 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 GNG4P50150 75 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 GTSF1LQ9H1H1 148 aa10.18□□□□□ -0.78
VPS39-210ENST00000568357 C19orf71A6NCJ1 209 aa10.17□□□□□ -0.78
VPS39-210ENST00000568357 OR5AL1P0C617 328 aa10.17□□□□□ -0.78
VPS39-210ENST00000568357 BLOC1S1P78537 153 aa10.17□□□□□ -0.78
VPS39-210ENST00000568357 LYPD6BQ8NI32 183 aa10.17□□□□□ -0.78
VPS39-210ENST00000568357 TRAV8-6A0A0B4J262 113 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 IGHV3-38A0A0C4DH36 116 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 GZMBP10144 247 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 TAGLN2P37802 199 aaKnown RBP10.16□□□□□ -0.78
VPS39-210ENST00000568357 SSTP61278 116 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 OR10J3Q5JRS4 329 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 LELP1Q5T871 98 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 DAZAP1Q96EP5 407 aaKnown RBP10.16□□□□□ -0.78
VPS39-210ENST00000568357 SMIM12Q96EX1 92 aa10.16□□□□□ -0.78
VPS39-210ENST00000568357 APOBP04114 4563 aaKnown RBP10.16□□□□□ -0.78
VPS39-210ENST00000568357 RBFOX3A6NFN3 312 aa10.15□□□□□ -0.78
VPS39-210ENST00000568357 K7EP13 123 aa10.15□□□□□ -0.78
VPS39-210ENST00000568357 MAPKAPK5-AS1Q8N8E1 139 aa10.15□□□□□ -0.78
VPS39-210ENST00000568357 OR2D3Q8NGH3 330 aa10.15□□□□□ -0.78
VPS39-210ENST00000568357 MSRB1Q9NZV6 116 aa10.15□□□□□ -0.78
VPS39-210ENST00000568357 IGLC6P0CF74 106 aa10.14□□□□□ -0.79
VPS39-210ENST00000568357 LINC01556Q5JQF7 62 aa10.14□□□□□ -0.79
VPS39-210ENST00000568357 SPANXN1Q5VSR9 72 aa10.14□□□□□ -0.79
VPS39-210ENST00000568357 KRTAP10-2P60368 255 aa10.13□□□□□ -0.79
VPS39-210ENST00000568357 SPATA12Q7Z6I5 190 aa10.13□□□□□ -0.79
VPS39-210ENST00000568357 NFE4Q86UQ8 179 aa10.13□□□□□ -0.79
VPS39-210ENST00000568357 OCC1Q8TAD7 63 aa10.13□□□□□ -0.79
VPS39-210ENST00000568357 C16orf90A8MZG2 172 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 P01737 135 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 IGHV3-30P01768 117 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 IGHV3-33P01772 117 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 IGHV3-30-3P0DP02 117 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 IGHV3-30-5P0DP03 117 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 RPS20P60866 119 aaKnown RBP10.12□□□□□ -0.79
VPS39-210ENST00000568357 RAB4BP61018 213 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 Q8N3U1 123 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 C10orf126Q8N4M7 172 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 FER1L6-AS1Q8NA97 138 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 NUDT10Q8NFP7 164 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 NUDT11Q96G61 164 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 TPPP3Q9BW30 176 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 KIF25-AS1Q9Y6Z4 181 aa10.12□□□□□ -0.79
VPS39-210ENST00000568357 TRBV10-1A0A0K0K1A3 114 aa10.11□□□□□ -0.79
VPS39-210ENST00000568357 IBA57-AS1B1ANH7 110 aa10.11□□□□□ -0.79
VPS39-210ENST00000568357 K7EN84 100 aa10.11□□□□□ -0.79
VPS39-210ENST00000568357 BIN3Q9NQY0 253 aa10.11□□□□□ -0.79
VPS39-210ENST00000568357 TMEM250H0YL14 139 aa10.1□□□□□ -0.79
VPS39-210ENST00000568357 UBE2D3P61077 147 aa10.1□□□□□ -0.79
VPS39-210ENST00000568357 UBE2D2P62837 147 aa10.1□□□□□ -0.79
VPS39-210ENST00000568357 ZNF56Q15929 161 aa10.1□□□□□ -0.79
VPS39-210ENST00000568357 OR10G8Q8NGN5 311 aa10.1□□□□□ -0.79
VPS39-210ENST00000568357 RNASE7Q9H1E1 156 aaKnown RBP10.1□□□□□ -0.79
VPS39-210ENST00000568357 TRBV7-3A0A075B6L6 115 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 A0A087WWC5 75 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 F5H697 171 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 RPL36AP83881 106 aaKnown RBP10.09□□□□□ -0.79
VPS39-210ENST00000568357 TOR2AQ5JU69 321 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 LYZL1Q6UWQ5 148 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 NEXN-AS1Q8NBZ9 246 aa10.09□□□□□ -0.79
VPS39-210ENST00000568357 RPL36ALQ969Q0 106 aaKnown RBP10.09□□□□□ -0.79
VPS39-210ENST00000568357 DNAH5Q8TE73 4624 aa10.08□□□□□ -0.8
VPS39-210ENST00000568357 A0A087WTM6 91 aa10.08□□□□□ -0.8
VPS39-210ENST00000568357 XKRY2A2RUG3 117 aa10.08□□□□□ -0.8
VPS39-210ENST00000568357 F2Z2F3 143 aa10.08□□□□□ -0.8
VPS39-210ENST00000568357 FUSP35637 526 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS39-210ENST00000568357 CACNG7P62955 275 aa10.08□□□□□ -0.8
VPS39-210ENST00000568357 EIF5A2Q9GZV4 153 aaKnown RBP10.08□□□□□ -0.8
VPS39-210ENST00000568357 CDK2AP2O75956 126 aa10.07□□□□□ -0.8
VPS39-210ENST00000568357 SMIM17P0DL12 118 aa10.07□□□□□ -0.8
VPS39-210ENST00000568357 CEBPGP53567 150 aa10.07□□□□□ -0.8
VPS39-210ENST00000568357 DAZ4Q86SG3 579 aaKnown RBP10.07□□□□□ -0.8
VPS39-210ENST00000568357 FAM210AQ96ND0 272 aa10.07□□□□□ -0.8
VPS39-210ENST00000568357 AP1S3Q96PC3 154 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms