RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 DYNC1H1Q14204 4646 aaKnown RBP12.68□□□□□ -0.38
CLN3-227ENST00000567495 A0A087WWC5 75 aa12.67□□□□□ -0.38
CLN3-227ENST00000567495 LINC00694P0DN24 101 aa12.67□□□□□ -0.38
CLN3-227ENST00000567495 ERVFC1-1P60608 527 aa12.67□□□□□ -0.38
CLN3-227ENST00000567495 FAM74A4Q5TZK3 123 aa12.67□□□□□ -0.38
CLN3-227ENST00000567495 PRR27Q6MZM9 219 aa12.67□□□□□ -0.38
CLN3-227ENST00000567495 SSBP4Q9BWG4 385 aaPredicted RBP12.67□□□□□ -0.38
CLN3-227ENST00000567495 TRBV10-1A0A0K0K1A3 114 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 GAGE12JA6NER3 117 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 OR5AL1P0C617 328 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 BCL2P10415 239 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 GAGE1Q13065 139 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 GAGE4Q13068 117 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 GAGE5Q13069 117 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 GAGE13Q4V321 117 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 CENPWQ5EE01 88 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 C9orf62Q8N4C0 152 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 VAX2Q9UIW0 290 aa12.66□□□□□ -0.38
CLN3-227ENST00000567495 A0A087WWL8 130 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 SNAI2O43623 268 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 GNG4P50150 75 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 RPL19P84098 196 aaKnown RBP12.65□□□□□ -0.38
CLN3-227ENST00000567495 C14orf178Q8N769 122 aaPredicted RBP12.65□□□□□ -0.38
CLN3-227ENST00000567495 DAZAP1Q96EP5 407 aaKnown RBP12.65□□□□□ -0.38
CLN3-227ENST00000567495 DERL1Q9BUN8 251 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 BIN3Q9NQY0 253 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 PGPEP1Q9NXJ5 209 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 TNFRSF18Q9Y5U5 241 aa12.65□□□□□ -0.38
CLN3-227ENST00000567495 hCG_2014768A0A024R1R8 64 aa12.64□□□□□ -0.39
CLN3-227ENST00000567495 RPS20P60866 119 aaKnown RBP12.64□□□□□ -0.39
CLN3-227ENST00000567495 MED9Q9NWA0 146 aa12.64□□□□□ -0.39
CLN3-227ENST00000567495 IBA57-AS1B1ANH7 110 aa12.63□□□□□ -0.39
CLN3-227ENST00000567495 CDK2AP2O75956 126 aa12.63□□□□□ -0.39
CLN3-227ENST00000567495 SPANXN1Q5VSR9 72 aa12.63□□□□□ -0.39
CLN3-227ENST00000567495 OR10AG1Q8NH19 301 aa12.63□□□□□ -0.39
CLN3-227ENST00000567495 RAB4BP61018 213 aa12.62□□□□□ -0.39
CLN3-227ENST00000567495 BLOC1S1P78537 153 aa12.62□□□□□ -0.39
CLN3-227ENST00000567495 RPL36AP83881 106 aaKnown RBP12.62□□□□□ -0.39
CLN3-227ENST00000567495 RPL36ALQ969Q0 106 aaKnown RBP12.62□□□□□ -0.39
CLN3-227ENST00000567495 XKRY2A2RUG3 117 aa12.61□□□□□ -0.39
CLN3-227ENST00000567495 KRTAP10-2P60368 255 aa12.61□□□□□ -0.39
CLN3-227ENST00000567495 LAGE3Q14657 143 aa12.61□□□□□ -0.39
CLN3-227ENST00000567495 CDPF1Q6NVV7 123 aa12.61□□□□□ -0.39
CLN3-227ENST00000567495 Q9UF83 564 aa12.61□□□□□ -0.39
CLN3-227ENST00000567495 TRBV7-3A0A075B6L6 115 aa12.6□□□□□ -0.39
CLN3-227ENST00000567495 A0A087WTM6 91 aa12.6□□□□□ -0.39
CLN3-227ENST00000567495 RAB19A4D1S5 217 aa12.6□□□□□ -0.39
CLN3-227ENST00000567495 IGLV2-8P01709 118 aa12.6□□□□□ -0.39
CLN3-227ENST00000567495 OR2D3Q8NGH3 330 aa12.6□□□□□ -0.39
CLN3-227ENST00000567495 C19orf71A6NCJ1 209 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 P01737 135 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 IGHV3-30P01768 117 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 IGHV3-33P01772 117 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 IGHV3-30-3P0DP02 117 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 IGHV3-30-5P0DP03 117 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 OR10G8Q8NGN5 311 aa12.59□□□□□ -0.39
CLN3-227ENST00000567495 PSCAO43653 123 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 SMIM17P0DL12 118 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 ZNF56Q15929 161 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 TOR2AQ5JU69 321 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.58□□□□□ -0.4
CLN3-227ENST00000567495 FER1L6-AS1Q8NA97 138 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 AP1S3Q96PC3 154 aa12.58□□□□□ -0.4
CLN3-227ENST00000567495 F2Z2F3 143 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 UBE2D3P61077 147 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 UBE2D2P62837 147 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 CACNG7P62955 275 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 ALKAL2Q6UX46 152 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 TM2D2Q9BX73 214 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 URGCP-MRPS24S4R325 110 aa12.57□□□□□ -0.4
CLN3-227ENST00000567495 TRBV20OR9-2A0A075B6H5 130 aa12.56□□□□□ -0.4
CLN3-227ENST00000567495 TRAV8-3A0A0A6YYJ7 113 aa12.56□□□□□ -0.4
CLN3-227ENST00000567495 IGLC6P0CF74 106 aa12.56□□□□□ -0.4
CLN3-227ENST00000567495 MUC21A0A0G2JKD1 596 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 MUC21A0A140T8X8 626 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 F5H697 171 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 TMEM250H0YL14 139 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 LYPD6BQ8NI32 183 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 CHCHD7Q9BUK0 85 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 TPPP3Q9BW30 176 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 Q9HAA7 133 aa12.55□□□□□ -0.4
CLN3-227ENST00000567495 LRP1BQ9NZR2 4599 aa12.54□□□□□ -0.4
CLN3-227ENST00000567495 RBFOX3A6NFN3 312 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 GZMBP10144 247 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 SSTP61278 116 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 KCNIP4Q6PIL6 250 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 NIT1Q86X76 327 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 NEXN-AS1Q8NBZ9 246 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 KIF25-AS1Q9Y6Z4 181 aa12.53□□□□□ -0.4
CLN3-227ENST00000567495 H7C1H1 209 aa12.52□□□□□ -0.41
CLN3-227ENST00000567495 ELOBQ15370 118 aa12.52□□□□□ -0.41
CLN3-227ENST00000567495 TMEM97Q5BJF2 176 aa12.52□□□□□ -0.41
CLN3-227ENST00000567495 WDR73Q6P4I2 378 aa12.52□□□□□ -0.41
CLN3-227ENST00000567495 COX11Q9Y6N1 276 aa12.52□□□□□ -0.41
CLN3-227ENST00000567495 RYR1P21817 5038 aa12.51□□□□□ -0.41
CLN3-227ENST00000567495 A0A087WX48 190 aa12.51□□□□□ -0.41
CLN3-227ENST00000567495 NDUFS6O75380 124 aaKnown RBP12.51□□□□□ -0.41
CLN3-227ENST00000567495 TRGC1P0CF51 173 aa12.51□□□□□ -0.41
CLN3-227ENST00000567495 DAZ4Q86SG3 579 aaKnown RBP12.51□□□□□ -0.41
CLN3-227ENST00000567495 NUDT10Q8NFP7 164 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms