RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ERVFC1-1P60608 527 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 SOHLH1Q5JUK2 328 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 FAM74A4Q5TZK3 123 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 SPANXN1Q5VSR9 72 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 ZFP2Q6ZN57 461 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 UBE2DNLQ8IWF7 75 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 C14orf178Q8N769 122 aaPredicted RBP13.51□□□□□ -0.25
CLN3-225ENST00000566824 ISOC2Q96AB3 205 aa13.51□□□□□ -0.25
CLN3-225ENST00000566824 RNF212Q495C1 297 aa13.5□□□□□ -0.25
CLN3-225ENST00000566824 NAT8Q9UHE5 227 aa13.5□□□□□ -0.25
CLN3-225ENST00000566824 XKRY2A2RUG3 117 aa13.49□□□□□ -0.25
CLN3-225ENST00000566824 CIDEAO60543 219 aa13.49□□□□□ -0.25
CLN3-225ENST00000566824 ADIRFQ15847 76 aa13.49□□□□□ -0.25
CLN3-225ENST00000566824 KIF25-AS1Q9Y6Z4 181 aa13.49□□□□□ -0.25
CLN3-225ENST00000566824 TRBV6-4A0A1B0GX49 114 aa13.48□□□□□ -0.25
CLN3-225ENST00000566824 CTRLP40313 264 aa13.48□□□□□ -0.25
CLN3-225ENST00000566824 MRPL23Q16540 153 aaKnown RBP13.48□□□□□ -0.25
CLN3-225ENST00000566824 OSTCQ9NRP0 149 aa13.48□□□□□ -0.25
CLN3-225ENST00000566824 LINC00315P59091 139 aa13.47□□□□□ -0.25
CLN3-225ENST00000566824 V9GYV3 84 aa13.47□□□□□ -0.25
CLN3-225ENST00000566824 IGLV2-18A0A075B6J9 118 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 A0A1W2PPQ1 181 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 RHODO00212 210 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 CCL18P55774 89 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 LYPD5Q6UWN5 251 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 ZNRF2Q8NHG8 242 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 DNAH10Q8IVF4 4471 aa13.46□□□□□ -0.25
CLN3-225ENST00000566824 F2Z2F3 143 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 NTF3P20783 257 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 SRIP30626 198 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 CACNG7P62955 275 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 RHOHQ15669 191 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 CT83Q5H943 113 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 PGLYRP4Q96LB8 373 aa13.45□□□□□ -0.26
CLN3-225ENST00000566824 A8MWL6 223 aa13.44□□□□□ -0.26
CLN3-225ENST00000566824 M0R2N4 97 aa13.44□□□□□ -0.26
CLN3-225ENST00000566824 NEGR1Q7Z3B1 354 aa13.44□□□□□ -0.26
CLN3-225ENST00000566824 PRADC1Q9BSG0 188 aa13.44□□□□□ -0.26
CLN3-225ENST00000566824 GAGE12JA6NER3 117 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 LINC00694P0DN24 101 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 EVI2AP22794 236 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 GAGE1Q13065 139 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 GAGE4Q13068 117 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 GAGE5Q13069 117 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 GAGE13Q4V321 117 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 OR10G8Q8NGN5 311 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 TSKUQ8WUA8 353 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 CNFNQ9BYD5 112 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 MRPS16Q9Y3D3 137 aaKnown RBP13.43□□□□□ -0.26
CLN3-225ENST00000566824 DNAH2Q9P225 4427 aa13.43□□□□□ -0.26
CLN3-225ENST00000566824 ADCYAP1P18509 176 aa13.42□□□□□ -0.26
CLN3-225ENST00000566824 FOXA3P55318 350 aaPredicted RBP13.42□□□□□ -0.26
CLN3-225ENST00000566824 ZNF56Q15929 161 aa13.42□□□□□ -0.26
CLN3-225ENST00000566824 WDR73Q6P4I2 378 aa13.42□□□□□ -0.26
CLN3-225ENST00000566824 COMMD7Q86VX2 200 aa13.42□□□□□ -0.26
CLN3-225ENST00000566824 AP1S3Q96PC3 154 aa13.42□□□□□ -0.26
CLN3-225ENST00000566824 C15orf54Q8N8G6 183 aa13.41□□□□□ -0.26
CLN3-225ENST00000566824 FAM3BP58499 235 aaPredicted RBP13.4□□□□□ -0.26
CLN3-225ENST00000566824 RAB4BP61018 213 aa13.4□□□□□ -0.26
CLN3-225ENST00000566824 TWIST1Q15672 202 aa13.4□□□□□ -0.26
CLN3-225ENST00000566824 LINC00862A6NCI5 91 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 HIGD1CA8MV81 97 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 MGPP08493 103 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 UPK3BQ9BT76 320 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 TMEM218A2RU14 115 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 F5H697 171 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 UQCC3Q6UW78 93 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 Q6ZR54 194 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 GFRA4Q9GZZ7 299 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 Q9H8V8 135 aa13.39□□□□□ -0.27
CLN3-225ENST00000566824 SMIM17P0DL12 118 aa13.38□□□□□ -0.27
CLN3-225ENST00000566824 NUP35Q8NFH5 326 aa13.38□□□□□ -0.27
CLN3-225ENST00000566824 ATP6V0E2Q8NHE4 81 aa13.38□□□□□ -0.27
CLN3-225ENST00000566824 KRTAP1-5Q9BYS1 174 aa13.38□□□□□ -0.27
CLN3-225ENST00000566824 TRGC1P0CF51 173 aa13.37□□□□□ -0.27
CLN3-225ENST00000566824 SUMO4Q6EEV6 95 aa13.37□□□□□ -0.27
CLN3-225ENST00000566824 WFDC10BQ8IUB3 73 aa13.37□□□□□ -0.27
CLN3-225ENST00000566824 NEXN-AS1Q8NBZ9 246 aa13.37□□□□□ -0.27
CLN3-225ENST00000566824 DNAH17Q9UFH2 4485 aa13.37□□□□□ -0.27
CLN3-225ENST00000566824 FRAS1Q86XX4 4008 aa13.36□□□□□ -0.27
CLN3-225ENST00000566824 SMIM27A0A1W2PRY6 76 aa13.36□□□□□ -0.27
CLN3-225ENST00000566824 FAM231BA6NCW3 169 aa13.36□□□□□ -0.27
CLN3-225ENST00000566824 SH2D6Q7Z4S9 175 aa13.36□□□□□ -0.27
CLN3-225ENST00000566824 DPH3P1Q9H4G8 78 aa13.36□□□□□ -0.27
CLN3-225ENST00000566824 NBDYA0A0U1RRE5 68 aa13.35□□□□□ -0.27
CLN3-225ENST00000566824 M0QY20 66 aa13.35□□□□□ -0.27
CLN3-225ENST00000566824 TIRAPP58753 221 aa13.35□□□□□ -0.27
CLN3-225ENST00000566824 TRBV10-1A0A0K0K1A3 114 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 A0A1B0GUT8 65 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 F8W036 122 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 UBE2D3P61077 147 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 UBE2D2P62837 147 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 GTSF1LQ9H1H1 148 aa13.34□□□□□ -0.27
CLN3-225ENST00000566824 TRAV26-2A0A0B4J265 109 aa13.33□□□□□ -0.28
CLN3-225ENST00000566824 NAT8BQ9UHF3 227 aa13.33□□□□□ -0.28
CLN3-225ENST00000566824 TRBV7-3A0A075B6L6 115 aa13.32□□□□□ -0.28
CLN3-225ENST00000566824 IGHV3-38A0A0C4DH36 116 aa13.32□□□□□ -0.28
CLN3-225ENST00000566824 SIVA1O15304 175 aa13.32□□□□□ -0.28
CLN3-225ENST00000566824 RPL36AP83881 106 aaKnown RBP13.32□□□□□ -0.28
CLN3-225ENST00000566824 PNRC1Q12796 327 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms