RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 M0R381 172 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 MGST1P10620 155 aaKnown RBP6.71□□□□□ -1.34
CLN3-220ENST00000566040 S100A4P26447 101 aaKnown RBP6.71□□□□□ -1.34
CLN3-220ENST00000566040 CTRLP40313 264 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 WFDC10BQ8IUB3 73 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 GTSF1Q8WW33 167 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 SLAQ13239 276 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 MRPL23Q16540 153 aaKnown RBP6.7□□□□□ -1.34
CLN3-220ENST00000566040 Q6ZRN7 208 aaPredicted RBP6.7□□□□□ -1.34
CLN3-220ENST00000566040 LINC01551Q86U37 167 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 ZFP82Q8N141 532 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 Q8N3U1 123 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 OR2D3Q8NGH3 330 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 CNFNQ9BYD5 112 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 LRP1BQ9NZR2 4599 aa6.7□□□□□ -1.34
CLN3-220ENST00000566040 CCL18P55774 89 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 TIRAPP58753 221 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 RHOHQ15669 191 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 FAM231DQ6ZW35 169 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 NEGR1Q7Z3B1 354 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 Q9H8V8 135 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 PHLDA3Q9Y5J5 127 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 LY96Q9Y6Y9 160 aa6.69□□□□□ -1.34
CLN3-220ENST00000566040 CIDEAO60543 219 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 SRIP30626 198 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 FAM74A4Q5TZK3 123 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 LYZL1Q6UWQ5 148 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 FER1L6-AS1Q8NA97 138 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 SMIM7Q9BQ49 75 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 EIF5A2Q9GZV4 153 aaKnown RBP6.68□□□□□ -1.34
CLN3-220ENST00000566040 RPP21Q9H633 154 aaKnown RBP6.68□□□□□ -1.34
CLN3-220ENST00000566040 KIAA1109Q2LD37 5005 aa6.68□□□□□ -1.34
CLN3-220ENST00000566040 APOBP04114 4563 aaKnown RBP6.67□□□□□ -1.34
CLN3-220ENST00000566040 RHODO00212 210 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 P01737 135 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 RPL23P62829 140 aaKnown RBP6.67□□□□□ -1.34
CLN3-220ENST00000566040 SYT8Q8NBV8 401 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 OR10G8Q8NGN5 311 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 TNFRSF18Q9Y5U5 241 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 V9GYV3 84 aa6.67□□□□□ -1.34
CLN3-220ENST00000566040 HERC2O95714 4834 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 GAGE12JA6NER3 117 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 DNAH10OSP0CZ25 163 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 CEBPGP53567 150 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 FOXA3P55318 350 aaPredicted RBP6.66□□□□□ -1.34
CLN3-220ENST00000566040 UBE2D3P61077 147 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 UBE2D2P62837 147 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 TNP2Q05952 138 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 GAGE1Q13065 139 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 GAGE4Q13068 117 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 GAGE5Q13069 117 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 GAGE13Q4V321 117 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 NEXN-AS1Q8NBZ9 246 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 ISOC2Q96AB3 205 aa6.66□□□□□ -1.34
CLN3-220ENST00000566040 ZNF727A8MUV8 499 aa6.65□□□□□ -1.34
CLN3-220ENST00000566040 SIVA1O15304 175 aa6.65□□□□□ -1.34
CLN3-220ENST00000566040 EVI2AP22794 236 aa6.65□□□□□ -1.34
CLN3-220ENST00000566040 RPS20P60866 119 aaKnown RBP6.65□□□□□ -1.34
CLN3-220ENST00000566040 SSTP61278 116 aa6.65□□□□□ -1.34
CLN3-220ENST00000566040 CT83Q5H943 113 aa6.65□□□□□ -1.34
CLN3-220ENST00000566040 HSPG2P98160 4391 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 DNAH8Q96JB1 4490 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 A0A1W2PPQ1 181 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 M0QY20 66 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 GAS8-AS1O95177 125 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 NTF3P20783 257 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 RAB4BP61018 213 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 CLLU1Q5K131 121 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 WDR73Q6P4I2 378 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 C6orf223Q8N319 242 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 ATP6V0E2Q8NHE4 81 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 PRADC1Q9BSG0 188 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 GTSF1LQ9H1H1 148 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 OSTCQ9NRP0 149 aa6.64□□□□□ -1.35
CLN3-220ENST00000566040 PRSS29PA6NIE9 313 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 GATCO43716 136 aaKnown RBP6.63□□□□□ -1.35
CLN3-220ENST00000566040 ADCYAP1P18509 176 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 LELP1Q5T871 98 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 C1orf134Q5TEV5 83 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 SPANXN1Q5VSR9 72 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 SUMO4Q6EEV6 95 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 NTM-AS1Q6ZSK4 140 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 DAZAP1Q96EP5 407 aaKnown RBP6.63□□□□□ -1.35
CLN3-220ENST00000566040 AP1S3Q96PC3 154 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 TPPP3Q9BW30 176 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 BIN3Q9NQY0 253 aa6.63□□□□□ -1.35
CLN3-220ENST00000566040 RYR1P21817 5038 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 TRBV10-1A0A0K0K1A3 114 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 F2Z2F3 143 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 CACNG7P62955 275 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 ZNF56Q15929 161 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 LINC01556Q5JQF7 62 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 LINC00336Q6ZUF6 198 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 SH2D6Q7Z4S9 175 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 DNAJC30Q96LL9 226 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 KRTAP17-1Q9BYP8 105 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 SMDT1Q9H4I9 107 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 NAT8Q9UHE5 227 aa6.62□□□□□ -1.35
CLN3-220ENST00000566040 TRBV7-3A0A075B6L6 115 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 ERVFC1-1P60608 527 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms